ellipseCA: Draw confidence ellipses in CA

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/ellipseCA.R

Description

Draw confidence ellipses in CA around rows and/or columns.

Usage

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ellipseCA (x, ellipse=c("col","row"), method="multinomial", nbsample=100,
    axes=c(1,2), xlim=NULL, ylim=NULL, col.row="blue", col.col="red",
	col.row.ell=col.row, col.col.ell=col.col, 
	graph.type = c("ggplot","classic"), ggoptions = NULL, ...)

Arguments

x

an object of class CA

ellipse

a vector of character that defines which ellipses are drawn

method

the method to construct ellipses (see details below)

nbsample

number of samples drawn to evaluate the stability of the points

axes

a length 2 vector specifying the components to plot

xlim

range for the plotted 'x' values, defaulting to the range of the finite values of 'x'

ylim

range for the plotted 'y' values, defaulting to the range of the finite values of 'y'

col.row

a color for the rows points

col.col

a color for columns points

col.row.ell

a color for the ellipses of rows points (the color "transparent" can be used if an ellipse should not be drawn)

col.col.ell

a color for the ellipses of columns points (the color "transparent" can be used if an ellipse should not be drawn)

graph.type

a character that gives the type of graph used: "ggplot" or "classic"

ggoptions

a list that gives the graph options when grah.type="ggplot" is used. See the optines and the default values in the details section

...

further arguments passed to or from the plot.CA function, such as title, invisible, ...

Details

With method="multinomial", the table X with the active elements is taken as a reference. Then new data tables are drawn in the following way: N (the sum of X) values are drawn from a multinomial distribution with theoretical frequencies equals to the values in the cells divided by N.

With method="boot", the values are bootstrapped row by row: Ni (the sum of row i in the X table) values are taken in a vector with Nij equals to column j (with j varying from 1 to J).

Thus nbsample new datasets are drawn and projected as supplementary rows and/or supplementary columns. Then confidence ellipses are drawn for each elements thanks to the nbsample supplementary points.

Value

Returns the factor map with the joint plot of CA with ellipses around some elements.

Author(s)

Francois Husson Francois.Husson@agrocampus-ouest.fr

References

Lebart, L., Morineau, A. and Piron, M. (1995) Statistique exploratoire multidimensionnelle, Dunod.

See Also

plot.CA, CA

Examples

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data(children)
res.ca <- CA (children, col.sup = 6:8, row.sup = 15:18)
## Ellipses for all the active elements
ellipseCA(res.ca)
## Ellipses around some columns only
ellipseCA(res.ca,ellipse="col",col.col.ell=c(rep("red",2),rep("transparent",3)),
     invisible=c("row.sup","col.sup"))

Example output



FactoMineR documentation built on Jan. 8, 2021, 2:18 a.m.