FastKM: A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Version 1.0

A computationally efficient and statistically rigorous fast Kernel Machine method for multi-kernel analysis. The approach is based on a low-rank approximation to the nuisance effect kernel matrices. The algorithm is applicable to continuous, binary, and survival traits and is implemented using the existing single-kernel analysis software 'SKAT' and 'coxKM'. 'coxKM' can be obtained from http://www.hsph.harvard.edu/xlin/software.html.

AuthorRachel Marceau, Wenbin Lu, Michele M. Sale, Bradford B. Worrall, Stephen R. Williams, Fang-Chi Hsu, Jung-Ying Tzeng, and Shannon T. Holloway
Date of publication2015-11-10 11:08:14
MaintainerShannon T. Holloway <sthollow@ncsu.edu>
LicenseGPL-2
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("FastKM")

Getting started

Package overview

Popular man pages

FastKM-package: A Fast Multiple-Kernel Method Based on a Low-Rank...
geno: Create a geno Object.
geno-class: Class '"geno"'
KITdesign: A Fast Multiple-Kernel Method Based on a Low-Rank...
KITkernel: A Fast Multiple-Kernel Method Based on a Low-Rank...
nongeno: Create a nongeno Object
nongeno-class: Class '"nongeno"'
See all...

All man pages Function index File listing

Man pages

FastKM-package: A Fast Multiple-Kernel Method Based on a Low-Rank...
geno: Create a geno Object.
geno-class: Class '"geno"'
KITdesign: A Fast Multiple-Kernel Method Based on a Low-Rank...
KITkernel: A Fast Multiple-Kernel Method Based on a Low-Rank...
nongeno: Create a nongeno Object
nongeno-class: Class '"nongeno"'

Functions

Files

NAMESPACE
R
R/KITdesignObj.R
R/KITkernel.R
R/nongeno.R
R/deduceTrait.R
R/survivalKM.R
R/calcKernelObj.R
R/eigFunc.R
R/shrinkA.R
R/geno.R
R/skatKM.R
R/testGeno.R
R/toSNP.R
R/A01Classes.R
R/processWgts.R
R/zzz.R
MD5
DESCRIPTION
man
man/KITkernel.Rd
man/FastKM-package.Rd
man/nongeno.Rd
man/KITdesign.Rd
man/nongeno-class.Rd
man/geno-class.Rd
man/geno.Rd
FastKM documentation built on May 19, 2017, 1:16 p.m.

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