createCohortBasedCovariateSettings: Create settings for covariates based on other cohorts
In FeatureExtraction: Generating Features for a Cohort

View source: R/GetCovariatesFromOtherCohorts.R

createCohortBasedCovariateSettings

R Documentation

Create settings for covariates based on other cohorts

Description

Create settings for covariates based on other cohorts

Usage

createCohortBasedCovariateSettings(
  analysisId,
  covariateCohortDatabaseSchema = NULL,
  covariateCohortTable = NULL,
  covariateCohorts,
  valueType = "binary",
  startDay = -365,
  endDay = 0,
  includedCovariateIds = c(),
  warnOnAnalysisIdOverlap = TRUE
)

Arguments

`analysisId`	A unique identifier for this analysis.
`covariateCohortDatabaseSchema`	The database schema where the cohorts used to define the covariates can be found. If set to `NULL`, the database schema will be guessed, for example using the same one as for the main cohorts.
`covariateCohortTable`	The table where the cohorts used to define the covariates can be found. If set to `NULL`, the table will be guessed, for example using the same one as for the main cohorts.
`covariateCohorts`	A data frame with at least two columns: 'cohortId' and 'cohortName'. The cohort ID should correspond to the `cohort_definition_id` of the cohort to use for creating a covariate.
`valueType`	Either 'binary' or 'count'. When `valueType = 'count'`, the covariate value will be the number of times the cohort was observed in the window.
`startDay`	What is the start day (relative to the index date) of the covariate window?
`endDay`	What is the end day (relative to the index date) of the covariate window?
`includedCovariateIds`	A list of covariate IDs that should be restricted to.
`warnOnAnalysisIdOverlap`	Warn if the provided 'analysisId' overlaps with any predefined analysis as available in the 'createCovariateSettings()' function.