jsmackerel: An example dataset of Japanese Spanich mackerel in GENEPOP...
In FinePop2: Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)
Description
Usage
Format
References
See Also
Examples
Description
An example of a genetic data for a Japanese Spanish mackerel population (Nakajima et al. 2014). It contains genotypic information of 5 microsatellite markers from 8 subpopulations of 715 individuals. GENEPOP format (Rousset 2008) text files are available. Name list of subpopulations also is attached.
Usage
1
data("jsmackerel")
Format
$ MS.genepop: Genotypic information of 5 microsatellites in GENEPOP format text data.
$ popname: Names of subpopulations.
References
Nakajima K et al. (2014) Genetic effects of marine stock enhancement: a case study based on the highly piscivorous Japanese Spanish mackerel. Canadian Journal of Fisheries and Aquatic Sciences, 71, 301-314.
Kitada S, Kitakado T, Kishino H (2007) Empirical Bayes inference of pairwise FST and its distribution in the genome. Genetics, 177, 861-873.
Rousset F (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources, 8, 103-106.
See Also
Examples
1
2
3
4
5
6
7
8
9
data(jsmackerel)
jsm.ms.genepop.file <- tempfile()
jsm.popname.file <- tempfile()
cat(jsmackerel$MS.genepop, file=jsm.ms.genepop.file, sep="\n")
cat(jsmackerel$popname, file=jsm.popname.file, sep=" ")
# See two text files in temporary directory.
# jsm.ms.genepop.file : GENEPOP format file of microsatellite data
# jsm.popname.file : plain text file of subpopulation names
FinePop2 documentation built on March 26, 2020, 9:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format References See Also Examples
Description
An example of a genetic data for a Japanese Spanish mackerel population (Nakajima et al. 2014). It contains genotypic information of 5 microsatellite markers from 8 subpopulations of 715 individuals. GENEPOP format (Rousset 2008) text files are available. Name list of subpopulations also is attached.
Usage
1 | data("jsmackerel")
|
Format
$ MS.genepop: Genotypic information of 5 microsatellites in GENEPOP format text data.
$ popname: Names of subpopulations.
References
Nakajima K et al. (2014) Genetic effects of marine stock enhancement: a case study based on the highly piscivorous Japanese Spanish mackerel. Canadian Journal of Fisheries and Aquatic Sciences, 71, 301-314.
Kitada S, Kitakado T, Kishino H (2007) Empirical Bayes inference of pairwise FST and its distribution in the genome. Genetics, 177, 861-873.
Rousset F (2008) Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux. Mol. Ecol. Resources, 8, 103-106.
See Also
Examples
1 2 3 4 5 6 7 8 9 | data(jsmackerel)
jsm.ms.genepop.file <- tempfile()
jsm.popname.file <- tempfile()
cat(jsmackerel$MS.genepop, file=jsm.ms.genepop.file, sep="\n")
cat(jsmackerel$popname, file=jsm.popname.file, sep=" ")
# See two text files in temporary directory.
# jsm.ms.genepop.file : GENEPOP format file of microsatellite data
# jsm.popname.file : plain text file of subpopulation names
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.