rotate_dot_plot_dendrogram: Interactively rotate dendrograms from dot_plot outputs

In FlexDotPlot: Flexible Dot Plot

Interactively rotate dendrograms from dot_plot outputs

Description

Take a output from dot_plot function and allow interactive dendrogram rotation with dendextend package

Usage

rotate_dot_plot_dendrogram(dot_plot_output, axis_to_rotate = c("x", "y"))

Arguments

dot_plot_output	Output from dot_plot function function
axis_to_rotate	Dendrogram to rotate "x" or "y"

Value

Print and return rotated dot plot

Author(s)

Simon Leonard - [e-mail]

Examples

# Perform dot_plot
if(interactive()){
library(FlexDotPlot)
data(CBMC8K_example_data)

# Run dot_plot
dotplot_output = dot_plot(data.to.plot=CBMC8K_example_data, size_var="RNA.avg.exp.scaled",
dend_x_var=c("RNA.avg.exp.scaled","ADT.avg.exp.scaled"),
dend_y_var=c("RNA.avg.exp.scaled","ADT.avg.exp.scaled"),
dist_method="euclidean",hclust_method="ward.D", do.return = TRUE)

# The following command has to be run when the user
#is running example("rotate_dot_plot_dendrogram") only.
dotplot_output$command=call("dot_plot", data.to.plot=as.name("CBMC8K_example_data"),
size_var="RNA.avg.exp.scaled",
dend_x_var=c("RNA.avg.exp.scaled","ADT.avg.exp.scaled"),
dend_y_var=c("RNA.avg.exp.scaled","ADT.avg.exp.scaled"),
dist_method="euclidean",hclust_method="ward.D", do.return = TRUE)

# y  dendrogram rotation
r1=rotate_dot_plot_dendrogram(dotplot_output, axis_to_rotate = "y")
# add x dendrogram rotation to previous result
#r2=rotate_dot_plot_dendrogram(r1, axis_to_rotate = "x")
}

FlexDotPlot documentation built on April 5, 2022, 1:14 a.m.