SimTrimor: Simulate data of stylar dimorphic populations

In FlowerMate: Reciprocity Indices for Style-Polymorphic Plants

Simulate data of stylar dimorphic populations

Description

Produces simulated datasets of heterostylous (trimorphic) individuals with as many rows as number of sex organs defined. One stigmas and two anthers are simulated per individual.

Usage

SimTrimor(NIDL=30,NIDM=30,NIDS=30,
LUPmeanX=0, LUPsdX=1, LBWmeanX=0, LBWsdX=1, LLWmeanX=0, LLWsdX=1,
MUPmeanX=0, MUPsdX=1, MBWmeanX=0, MBWsdX=1, MLWmeanX=0, MLWsdX=1,
SUPmeanX=0, SUPsdX=1, SBWmeanX=0, SBWsdX=1, SLWmeanX=0, SLWsdX=1,

LUPmeanY=0, LUPsdY=1, LBWmeanY=0, LBWsdY=1, LLWmeanY=0, LLWsdY=1,
MUPmeanY=0, MUPsdY=1, MBWmeanY=0, MBWsdY=1, MLWmeanY=0, MLWsdY=1,
SUPmeanY=0, SUPsdY=1, SBWmeanY=0, SBWsdY=1, SLWmeanY=0, SLWsdY=1,

LUPmeanZ=0, LUPsdZ=1, LBWmeanZ=0, LBWsdZ=1, LLWmeanZ=0, LLWsdZ=1,
MUPmeanZ=0, MUPsdZ=1, MBWmeanZ=0, MBWsdZ=1, MLWmeanZ=0, MLWsdZ=1,
SUPmeanZ=0, SUPsdZ=1, SBWmeanZ=0, SBWsdZ=1, SLWmeanZ=0, SLWsdZ=1,

pop_code="test1")

Arguments

NIDL	Number of large-morph individuals to be simulated
NIDM	Number of medium-morph individuals to be simulated
NIDS	Number of short-morph individuals to be simulated
LUPmeanX	Mean value of the simulated long morph for stigmas in the UP level (X axis).
LUPsdX	Standard deviation of the simulated long morph for stigmas in the UP level (X axis).
LBWmeanX	Mean value of the simulated long morph for stigmas in the BETWEEN level (X axis).
LBWsdX	Standard deviation of the simulated long morph for stigmas in the BETWEEN level (X axis).
LLWmeanX	Mean value of the simulated long morph for stigmas in the low (LW) level (X axis).
LLWsdX	Standard deviation of the simulated long morph for stigmas in the low (LW) level (X axis).
MUPmeanX	Mean value of the simulated medium morph for stigmas in the UP level (X axis).
MUPsdX	Standard deviation of the simulated medium morph for stigmas in the UP level (X axis).
MBWmeanX	Mean value of the simulated medium morph for stigmas in the BETWEEN level (X axis).
MBWsdX	Standard deviation of the simulated medium morph for stigmas in the BETWEEN level (X axis).
MLWmeanX	Mean value of the simulated medium morph for stigmas in the low (LW) level (X axis).
MLWsdX	Standard deviation of the simulated medium morph for stigmas in the low (LW) level (X axis).
SUPmeanX	Mean value of the simulated short morph for stigmas in the UP level (X axis).
SUPsdX	Standard deviation of the simulated short morph for stigmas in the UP level (X axis).
SBWmeanX	Mean value of the simulated short morph for stigmas in the BETWEEN level (X axis).
SBWsdX	Standard deviation of the simulated short morph for stigmas in the BETWEEN level (X axis).
SLWmeanX	Mean value of the simulated short morph for stigmas in the low (LOW) level (X axis).
SLWsdX	Standard deviation of the simulated short morph for stigmas in the low (LOW) level (X axis).
LUPmeanY	Mean value of the simulated long morph for stigmas in the UP level (Y axis).
LUPsdY	Standard deviation of the simulated long morph for stigmas in the UP level (Y axis).
LBWmeanY	Mean value of the simulated long morph for stigmas in the BETWEEN level (Y axis).
LBWsdY	Standard deviation of the simulated long morph for stigmas in the BETWEEN level (Y axis).
LLWmeanY	Mean value of the simulated long morph for stigmas in the low (LW) level (Y axis).
LLWsdY	Standard deviation of the simulated long morph for stigmas in the low (LW) level (Y axis).
MUPmeanY	Mean value of the simulated medium morph for stigmas in the UP level (Y axis).
MUPsdY	Standard deviation of the simulated medium morph for stigmas in the UP level (Y axis).
MBWmeanY	Mean value of the simulated medium morph for stigmas in the BETWEEN level (Y axis)
MBWsdY	Standard deviation of the simulated medium morph for stigmas in the BETWEEN level (Y axis).
MLWmeanY	Mean value of the simulated medium morph for stigmas in the low (LW) level (Y axis).
MLWsdY	Standard deviation of the simulated medium morph for stigmas in the low (LW) level (Y axis).
SUPmeanY	Mean value of the simulated short morph for stigmas in the UP level (Y axis).
SUPsdY	Standard deviation of the simulated short morph for stigmas in the UP level (Y axis).
SBWmeanY	Mean value of the simulated short morph for stigmas in the BETWEEN level (Y axis).
SBWsdY	Standard deviation of the simulated short morph for stigmas in the BETWEEN level (Y axis).
SLWmeanY	Mean value of the simulated short morph for stigmas in the low (LOW) level (Y axis).
SLWsdY	Standard deviation of the simulated short morph for stigmas in the low (LOW) level (Y axis).
LUPmeanZ	Mean value of the simulated long morph for stigmas in the UP level (Z axis).
LUPsdZ	Standard deviation of the simulated long morph for stigmas in the UP level (Z axis).
LBWmeanZ	Mean value of the simulated long morph for stigmas in the BETWEEN level (Z axis).
LBWsdZ	Standard deviation of the simulated long morph for stigmas in the BETWEEN level (Z axis).
LLWmeanZ	Mean value of the simulated long morph for stigmas in the low (LW) level (Z axis).
LLWsdZ	Standard deviation of the simulated long morph for stigmas in the low (LW) level (Z axis).
MUPmeanZ	Mean value of the simulated medium morph for stigmas in the UP level (Z axis).
MUPsdZ	Standard deviation of the simulated medium morph for stigmas in the UP level (Z axis).
MBWmeanZ	Mean value of the simulated medium morph for stigmas in the BETWEEN level (Z axis).
MBWsdZ	Standard deviation of the simulated medium morph for stigmas in the BETWEEN level (Z axis).
MLWmeanZ	Mean value of the simulated medium morph for stigmas in the low (LW) level (Z axis).
MLWsdZ	Standard deviation of the simulated medium morph for stigmas in the low (LW) level (Z axis).
SUPmeanZ	Mean value of the simulated short morph for stigmas in the UP level (Z axis).
SUPsdZ	Standard deviation of the simulated short morph for stigmas in the UP level (Z axis).
SBWmeanZ	Mean value of the simulated short morph for stigmas in the BETWEEN level (Z axis).
SBWsdZ	Standard deviation of the simulated short morph for stigmas in the BETWEEN level (Z axis).
SLWmeanZ	Mean value of the simulated short morph for stigmas in the low (LOW) level (Z axis).
SLWsdZ	Standard deviation of the simulated short morph for stigmas in the low (LOW) level (Z axis).
pop_code	A string, the population code of the simulated data

Details

Values for sex organs are randomly taken from normal distributions with the defined mean and standard deviation.

Value

A data frame with NID x Nst x Nan rows (one per simulated sex organ) and 8 columns (containing population code, morph, individual ID, sex organ ID, sex organ type, and coordinates x, y and z).

Author(s)

A. J. Muñoz-Pajares and V. I. Simón-Porcar,

Examples

## Getting a tiny dataset

SimTrimor(2,2,2)

## Getting a largest dataset and performing the analysis
sim.data.tri<-SimTrimor(20,20,20)
inaccuracy(sim.data.tri)

FlowerMate documentation built on June 22, 2024, 10:52 a.m.