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# library(ForceChoice)
#
# ############################### data ###############################
# N.person <- 500
# N.block <- 10
# I.block <- 3
# D <- 3
# fc.type <- "RANK"
# control <- NULL
#
# seed <- 3548875
# set.seed(seed)
# data.obj <- sim.data.TIRT(N.person = N.person, N.block = N.block,
# I.block = I.block, D = D, fc.type = fc.type,
# control = control)
# data.obj$par
# Q.matrix <- data.obj$Q.matrix
# response <- data.obj$response
# head(response)
# block.items <- data.obj$block.items
# pairs.value <- data.obj$pairs.value
# data <- get.data.from.response.TIRT(response, block.items,
# fc.type = fc.type,
# pairs.value = pairs.value)
# response.obj <- get.response.from.data.TIRT(data, block.items,
# fc.type = fc.type)
# head(response - response.obj$response)
# stopifnot(all(data == get.data.from.response.TIRT(response.obj$response,
# block.items,
# fc.type = fc.type,
# pairs.value = response.obj$pairs.value)))
#
# # ---- Verify unified block-item extraction ----
# block.items.from.data <- get.block.items.from.data(data)
# stopifnot(length(block.items.from.data) == N.block)
# stopifnot(all(mapply(setequal, block.items, block.items.from.data)))
#
# # ############################### Stan MCMC ###############################
# # object.TIRT.stan <- fit.TIRT(data, Q.matrix, block.items = block.items,
# # fc.type = fc.type,
# # method = "stan",
# # control.method = c(list(
# # init = "random",
# # algorithm = "HMC"), list(seed = seed, vis = TRUE)))
# # object.TIRT.stan
# # object.TIRT.stan$npar
# # cbind(data.obj$par, object.TIRT.stan$par$est)
# # object.TIRT.stan$par$Rhat
# # cbind(data.obj$gamma, object.TIRT.stan$gamma$est)
# # object.TIRT.stan$gamma$Rhat
# # get.fit.index(object.TIRT.stan)
#
# ############################### iStEM ###############################
# iStEM.control.method <- list(
# burnin.maxitr = 40,
# maxitr = 500,
# theta.proposal.sd = 0.35,
# optim.maxit = 50
# )
#
# object.TIRT.iStEM <- fit.TIRT(data, Q.matrix, block.items = block.items,
# fc.type = fc.type,
# method = "iStEM",
# control.method = c(iStEM.control.method, list(seed = seed, vis = TRUE)))
# object.TIRT.iStEM
# object.TIRT.iStEM$npar
# cbind(data.obj$par, object.TIRT.iStEM$par$est)
# cbind(data.obj$gamma, object.TIRT.iStEM$gamma$est)
#
# # ---- Validate logLik with new quadrature helpers ----
# ll <- logLik(object.TIRT.iStEM)
# stopifnot(inherits(ll, "logLik"))
# stopifnot(is.finite(as.numeric(ll)))
# cat(sprintf(" TIRT logLik: %.2f (df=%d)\n", as.numeric(ll), attr(ll, "df")))
#
# get.fit.index(object.TIRT.iStEM)
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