find_best_delta: Functional Cheng and Church Algorithm varying the delta value

In FunCC: Functional Cheng and Church Bi-Clustering

Description

The find_best_delta function evaluate the results of FunCC algorithm in terms of total H-score value, the number of obtained bi-clusters and the number of not assigned elements when varying the delta value

Usage

find_best_delta(
  fun_mat,
  delta_min,
  delta_max,
  num_delta = 10,
  template.type = "mean",
  theta = 1.5,
  number = 100,
  alpha = 0,
  beta = 0,
  const_alpha = FALSE,
  const_beta = FALSE,
  shift.alignement = FALSE,
  shift.max = 0.1,
  max.iter.align = 100
)

Arguments

fun_mat	The data array (n x m x T) where each entry corresponds to the measure of one observation i, i=1,...,n, for a functional variable m, m=1,...,p, at point t, t=1,...,T
delta_min	scalar: Manimum value of the maximum of accepted score, should be a real value > 0
delta_max	scalar: Maximum value of the maximum of accepted score, should be a real value > 0
num_delta	integer: number of delta to be evaluated between delta_min and delta_max
template.type	character: type of template required. If template.type='mean' the template is evaluated as the average function, if template.type='medoid' the template is evaluated as the medoid function.
theta	scalar: Scaling factor should be a real value > 1
number	integer: Maximum number of iterations
alpha	binary: if alpha=1 row shift is allowed, if alpha=0 row shift is avoided
beta	binary: if beta=1 row shift is allowed, if beta=0 row shift is avoided
const_alpha	logicol: indicates if row shift is contrained as constant
const_beta	logicol: indicates if col shift is contrained as constant
shift.alignement	logicol: If shift.alignement=True the shift aligment is performed, if shift.alignement=False no alignment is performed
shift.max	scalar: shift.max controls the maximal allowed shift, at each iteration, in the alignment procedure with respect to the range of curve domains. t.max must be such that 0<shift.max<1
max.iter.align	integer: maximum number of iteration in the alignment procedure

Value

a dataframe containing for each evaluated delta: Htot_sum (the sum of totale H-score), num_clust (the number of found Bi-clusters), not_assigned (the number of not assigned elements)

Examples

## Not run:  
data("funCCdata")
find_best_delta(funCCdata,delta_min=0.1,delta_max=20,num_delta=20,alpha=1,beta=0,const_alpha=TRUE)

## End(Not run)

FunCC documentation built on July 1, 2020, 7:09 p.m.