plotGVF: Plot the genetic variant function

In FunctanSNP: Functional Analysis (with Interactions) for Dense SNP Data

Plot the genetic variant function

Description

Plot the estimated genetic variant function obtained by SNPgvf or a given functional data object(s).

Usage

plotGVF(x, y = NULL, Lfdobj = 0, href = TRUE, titles = NULL,
  xlim = NULL, ylim = NULL, xlab = NULL, ylab = NULL,
  ask = FALSE, nx = NULL, axes = NULL)

Arguments

x	functional data object(s) to be plotted, such as the estimated genetic variant function obtained by SNPgvf.
y	sequence of points at which to evaluate the functions 'x' and plot on the horizontal axis. Defaults to seq(rangex[1], rangex[2], length = nx).
Lfdobj	either a nonnegative integer or a linear differential operator object. If present, the derivative or the value of applying the operator is plotted rather than the functions themselves.
href	a logical variable: If TRUE, add a horizontal reference line at 0.
titles	a vector of strings for identifying curves
xlim	a vector of length 2 containing axis limits for the horizontal axis.
ylim	a vector of length 2 containing axis limits for the vertical axis.
xlab	a label for the horizontal axis.
ylab	a label for the vertical axis.
ask	a logical value: If TRUE, each curve is shown separately, and the plot advances with a mouse click
nx	the number of points to use to define the plot. The default is usually enough, but for a highly variable function more may be required.
axes	Either a logical or a list or NULL. logical whether axes should be drawn on the plot list a list used to create custom axes used to create axes via x$axes[[1]] and x$axes[-1]. The primary example of this uses list("axesIntervals", ...)

Value

plot the estimated genetic variant function.

See Also

See Also as SNPgvf.

Examples

library(FunctanSNP)
n <- 20
m <- 50
simdata <- simX(n, m, seed = 1, d.ratio = 0)
X <- simdata$X
location <- simdata$location
SNPgvfres <- SNPgvf(location, X, type = "Bspline", nbasis = 5, params = 4, Plot = FALSE)
plotGVF(SNPgvfres)

FunctanSNP documentation built on Oct. 18, 2022, 5:08 p.m.