RDA_outputs_synthesis: RDA_outputs_synthesis function

In GABB: Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses

RDA_outputs_synthesis function

Description

This function facilitate output analysis of vegan package RDA.

Usage

RDA_outputs_synthesis(RDA, RDA.synth, RDA.anova, nbperms, RDA.Table)

Arguments

RDA	The RDA object : RDA <- vegan::rda(mtcars_quant~gear+carb,data=mtcars)
RDA.synth	TRUE or FALSE. If TRUE, displays the RDA model's global variance partitioning. Default is TRUE.
RDA.anova	TRUE or FALSE. If TRUE, prints the results of the vegan function anova.cca, displaying the variance partitioning by terms in the RDA model. Default is TRUE.
nbperms	Numeric number of permutations used by the RDA.anova function. Default is 1000.
RDA.Table	TRUE or FALSE. TRUE : calculate and display the variance percentage of considered factor / total unconstrained variance. Default : TRUE.

Value

Results can be displayed in the console. Outputs are saved in data frame.

Examples

library(vegan)
my.RDA <- vegan::rda(mtcars[,1:7]~vs+am+gear, data=mtcars)
RDA_outputs_synthesis(RDA = my.RDA, RDA.synth = TRUE, RDA.anova = FALSE, RDA.Table = TRUE)

GABB documentation built on June 8, 2025, 1:46 p.m.