database: database file in example

In GESE: Gene-Based Segregation Test

Description

a data frame containing the GENE and MAF information for the variants under consideration in the public reference database.

Usage

data("database")

Format

A data frame of 20 observations on the following 3 variables.

SNP

an unique identifier for variant

GENE

a character vector: Gene name

MAF

a numeric vector: minor allele frequency of the variants in the referecne database

Details

A data frame containing the information for all the variants satisfying the same filtering criteria in the chosen reference genome. It should include at least three columns with these names: SNP (unique SNP ID), GENE (gene name), MAF (minor allele frequency for the variant in reference database for the corresponding population).

Source

Randomly simulated data.

Examples

data(database)

Example output

Loading required package: kinship2
Loading required package: Matrix
Loading required package: quadprog

GESE documentation built on May 2, 2019, 3:59 a.m.