GESTr: Gene Expression State Transformation

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The Gene Expression State Transformation (GESTr) models the states of expression of genes across a compendium of samples in order to provide a universal scale of gene expression for all genes. TranSAM is a modification of the SAM approach designed to utilise GESTr-transformed gene expression data.

Author
Ed Curry
Date of publication
2013-03-07 13:16:24
Maintainer
Ed Curry <e.curry@imperial.ac.uk>
License
GPL (>= 2)
Version
0.1
URLs

View on CRAN

Man pages

ABIdata
Gene Expression Data Matrix
findReplicateGroups
Find Groups of Replicate Samples Within Dataset
fitGMM
Fitting Gaussian Mixture Models
fitRockeDurbin
Fit Rocke-Durbin Error Model
GESTr
Gene Expression State Transformation
getMonotonicConfidences
Ensure monotonicity of two-class gene expression state...
getMonotonicConfidences_multiclass
Ensure monotonicity of multi-class gene expression state...
mergeComponents
Merge GMM Components with Highly Overlapping Support
TranSAM
Gene Expression State Transformed Significance Analysis of...

Files in this package

GESTr
GESTr/MD5
GESTr/man
GESTr/man/getMonotonicConfidences_multiclass.Rd
GESTr/man/mergeComponents.Rd
GESTr/man/GESTr.Rd
GESTr/man/findReplicateGroups.Rd
GESTr/man/ABIdata.Rd
GESTr/man/fitRockeDurbin.Rd
GESTr/man/getMonotonicConfidences.Rd
GESTr/man/fitGMM.Rd
GESTr/man/TranSAM.Rd
GESTr/INDEX
GESTr/R
GESTr/R/mergeComponents.R
GESTr/R/getMonotonicConfidences.R
GESTr/R/fitGMM.R
GESTr/R/findReplicateGroups.R
GESTr/R/GESTr.R
GESTr/R/TranSAM.R
GESTr/R/fitRockeDurbin.R
GESTr/R/getMonotonicConfidences_multiclass.R
GESTr/data
GESTr/data/GESTr.rda
GESTr/DESCRIPTION
GESTr/NAMESPACE