GGMridge: Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
Version 1.1

Estimation of partial correlation matrix using ridge penalty followed by thresholding and reestimation. Under multivariate Gaussian assumption, the matrix constitutes an Gaussian graphical model (GGM).

Browse man pages Browse package API and functions Browse package files

AuthorMin Jin Ha [aut, cre], Shannon Holloway [ctb]
Date of publication2016-02-02 11:48:43
MaintainerShannon Holloway <sthollow@ncsu.edu>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GGMridge")

Man pages

EM.mixture: Estimation of the mixture distribution using EM algorithm
getEfronp: Estimation of empirical null distribution.
GGMridge-package: Gaussian Graphical Models Using Ridge Penalty Followed by...
ksStat: The Kolmogorov-Smirnov Statistic for p-Values
lambda.cv: Choose the Tuning Parameter of the Ridge Inverse
lambda.pcut.cv: Choose the Tuning Parameter of the Ridge Inverse and...
lambda.pcut.cv1: Choose the Tuning Parameter of the Ridge Inverse and...
lambda.TargetD: Shrinkage Estimation of a Covariance Matrix Toward an...
ne.lambda.cv: Choose the Tuning Parameter of a Ridge Regression Using...
R.separate.ridge: Estimation of Partial Correlation Matrix Using p Separate...
scaledMat: Scale a square matrix
simulateData: Generate Simulation Data from a Random Network.
StructuredEstimate: Estimation of Partial Correlation Matrix Given Zero...
transFisher: Fisher's Z-Transformation

Functions

EM.mixture Man page Source code
GGMridge Man page
R.separate.ridge Man page Source code
getEfronp Man page Source code
ksStat Man page Source code
lambda.TargetD Man page Source code
lambda.cv Man page Source code
lambda.pcut.cv Man page Source code
lambda.pcut.cv1 Man page Source code
ne.lambda.cv Man page Source code
onAttach Source code
scaledMat Man page Source code
simulateData Man page Source code
splitSets Source code
structuredEstimate Man page Source code
svdFunc Source code
transFisher Man page Source code

Files

NAMESPACE
R
R/lambda.cv.R
R/lambda.pcut.cv1.R
R/R.separate.ridge.R
R/lambda.TargetD.R
R/ne.lambda.cv.R
R/svdFunc.R
R/getEfronp.R
R/ksStat.R
R/splitSets.R
R/transFisher.R
R/simulateData.R
R/EM.mixture.R
R/scaledMat.R
R/StructuredEstimate.R
R/lambda.pcut.cv.R
R/zzz.R
MD5
DESCRIPTION
man
man/ne.lambda.cv.Rd
man/lambda.pcut.cv.Rd
man/R.separate.ridge.Rd
man/transFisher.Rd
man/lambda.pcut.cv1.Rd
man/lambda.cv.Rd
man/ksStat.Rd
man/EM.mixture.Rd
man/StructuredEstimate.Rd
man/getEfronp.Rd
man/simulateData.Rd
man/scaledMat.Rd
man/GGMridge-package.Rd
man/lambda.TargetD.Rd
GGMridge documentation built on May 20, 2017, 1:42 a.m.