GGMridge: Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation

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Estimation of partial correlation matrix using ridge penalty followed by thresholding and reestimation. Under multivariate Gaussian assumption, the matrix constitutes an Gaussian graphical model (GGM).

Author
Min Jin Ha [aut, cre], Shannon Holloway [ctb]
Date of publication
2016-02-02 11:48:43
Maintainer
Shannon Holloway <sthollow@ncsu.edu>
License
GPL-2
Version
1.1

View on CRAN

Man pages

EM.mixture
Estimation of the mixture distribution using EM algorithm
getEfronp
Estimation of empirical null distribution.
GGMridge-package
Gaussian Graphical Models Using Ridge Penalty Followed by...
ksStat
The Kolmogorov-Smirnov Statistic for p-Values
lambda.cv
Choose the Tuning Parameter of the Ridge Inverse
lambda.pcut.cv
Choose the Tuning Parameter of the Ridge Inverse and...
lambda.pcut.cv1
Choose the Tuning Parameter of the Ridge Inverse and...
lambda.TargetD
Shrinkage Estimation of a Covariance Matrix Toward an...
ne.lambda.cv
Choose the Tuning Parameter of a Ridge Regression Using...
R.separate.ridge
Estimation of Partial Correlation Matrix Using p Separate...
scaledMat
Scale a square matrix
simulateData
Generate Simulation Data from a Random Network.
StructuredEstimate
Estimation of Partial Correlation Matrix Given Zero...
transFisher
Fisher's Z-Transformation

Files in this package

GGMridge
GGMridge/NAMESPACE
GGMridge/R
GGMridge/R/lambda.cv.R
GGMridge/R/lambda.pcut.cv1.R
GGMridge/R/R.separate.ridge.R
GGMridge/R/lambda.TargetD.R
GGMridge/R/ne.lambda.cv.R
GGMridge/R/svdFunc.R
GGMridge/R/getEfronp.R
GGMridge/R/ksStat.R
GGMridge/R/splitSets.R
GGMridge/R/transFisher.R
GGMridge/R/simulateData.R
GGMridge/R/EM.mixture.R
GGMridge/R/scaledMat.R
GGMridge/R/StructuredEstimate.R
GGMridge/R/lambda.pcut.cv.R
GGMridge/R/zzz.R
GGMridge/MD5
GGMridge/DESCRIPTION
GGMridge/man
GGMridge/man/ne.lambda.cv.Rd
GGMridge/man/lambda.pcut.cv.Rd
GGMridge/man/R.separate.ridge.Rd
GGMridge/man/transFisher.Rd
GGMridge/man/lambda.pcut.cv1.Rd
GGMridge/man/lambda.cv.Rd
GGMridge/man/ksStat.Rd
GGMridge/man/EM.mixture.Rd
GGMridge/man/StructuredEstimate.Rd
GGMridge/man/getEfronp.Rd
GGMridge/man/simulateData.Rd
GGMridge/man/scaledMat.Rd
GGMridge/man/GGMridge-package.Rd
GGMridge/man/lambda.TargetD.Rd