dat: Example data

In GMAC: Genomic Mediation Analysis with Adaptive Confounding Adjustment

Example data

Description

This simulated data list is for demonstration.

Value

A list containing

known.conf	The known confounders matrix which is adjusted in all mediation tests. Each row is a confounder, each column is a sample.
cov.pool	The pool of candidate confounding variables from which potential confounders are adaptively selected to adjust for each mediation test. Each row is a covariate, each column is a sample.
exp.dat	The gene expression matrix. Each row is for one gene, each column is a sample.
snp.dat.cis	The cis-eQTL genotype matrix. Each row is an eQTL, each column is a sample.
trios.idx	The matrix of selected trios indexes (row numbers) for mediation tests. Each row consists of the index (i.e., row number) of the eQTLs in snp.dat.cis, the index of cis-gene transcript in exp.dat, and the index of trans-gene transcript in exp.dat. The dimension is the number of trios by three.

Examples

data(example)

GMAC documentation built on March 18, 2022, 5:39 p.m.