clin_data: Example Clinical Dataset for T-cell Acute Lymphoblastic...
In GRIN2: Genomic Random Interval (GRIN)
clin_data R Documentation
Example Clinical Dataset for T-cell Acute Lymphoblastic Leukemia (T-ALL)
Description
This example dataset contains clinical and demographic information for 265
newly diagnosed T-cell Acute Lymphoblastic Leukemia (T-ALL) patients and is
provided for demonstrating clinical and outcome analyses in GRIN2. The data
originate from Liu, Yu, et al. (2017) and include variables describing
patient characteristics, treatment response, and clinical outcomes.
Usage
clin_data
Format
A data frame with 265 rows and 11 columns:
- ID
Unique patient identifier.
- Sex
Patient sex.
- Race
Patient race.
- Age_Days
Age at diagnosis, in days.
- WBC
White blood cell count at diagnosis.
- MRD29
Measurable residual disease percentage at day 29 post-treatment.
- MRD.binary
Binary MRD status (0 = MRD <= 0.1, 1 = MRD > 0.1).
- os.time
Overall survival time in years from diagnosis to last
follow-up or death.
- os.censor
Overall survival event indicator
(0 = censored/alive at last follow-up, 1 = death).
- efs.time
Event-free survival time in years.
- efs.censor
Event-free survival event indicator
(0 = censored, 1 = event).
Source
Data derived from supplementary materials accompanying Liu, Yu,
et al. (2017), Nature Genetics.
\Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/ng.3909")}
Additional clinical variables were integrated from the Therapeutically
Applicable Research to Generate Effective Treatments (TARGET) program:
https://www.cancer.gov/ccg/research/genome-sequencing/target.
GRIN2 documentation built on Aug. 22, 2026, 5:09 p.m.
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| clin_data | R Documentation |
Example Clinical Dataset for T-cell Acute Lymphoblastic Leukemia (T-ALL)
Description
This example dataset contains clinical and demographic information for 265 newly diagnosed T-cell Acute Lymphoblastic Leukemia (T-ALL) patients and is provided for demonstrating clinical and outcome analyses in GRIN2. The data originate from Liu, Yu, et al. (2017) and include variables describing patient characteristics, treatment response, and clinical outcomes.
Usage
clin_data
Format
A data frame with 265 rows and 11 columns:
- ID
Unique patient identifier.
- Sex
Patient sex.
- Race
Patient race.
- Age_Days
Age at diagnosis, in days.
- WBC
White blood cell count at diagnosis.
- MRD29
Measurable residual disease percentage at day 29 post-treatment.
- MRD.binary
Binary MRD status (0 = MRD <= 0.1, 1 = MRD > 0.1).
- os.time
Overall survival time in years from diagnosis to last follow-up or death.
- os.censor
Overall survival event indicator (0 = censored/alive at last follow-up, 1 = death).
- efs.time
Event-free survival time in years.
- efs.censor
Event-free survival event indicator (0 = censored, 1 = event).
Source
Data derived from supplementary materials accompanying Liu, Yu, et al. (2017), Nature Genetics. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1038/ng.3909")}
Additional clinical variables were integrated from the Therapeutically Applicable Research to Generate Effective Treatments (TARGET) program: https://www.cancer.gov/ccg/research/genome-sequencing/target.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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