Select.HBGs: Select highly batch-sensitive genes (HBGs) under a group...

In GTEs: Group Technical Effects

Select highly batch-sensitive genes (HBGs) under a group variable.

Description

Select highly batch-sensitive genes (HBGs) under a group variable.

Usage

Select.HBGs(GTE, bins = 0.1, gte.ratio = 0.95)

Arguments

GTE	GTE result.
bins	Bins.
gte.ratio	Ratio of selected HBGs to the total GTE.

Value

Identified HBGs.

Examples

# GTE is the result of Run.GroupTechEffects function.
data_file <- system.file("extdata", "GTE_ct.rds", package = "GTEs")
GTE_ct <- readRDS(data_file)
HBGs <- Select.HBGs(GTE_ct)

GTEs documentation built on April 4, 2025, 3:50 a.m.