Man pages for GUILDS
Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure
| expected.SAD | Calculate the expected species abundance distribution of the... |
| expected.SAD.Guilds | Estimate the expected species abundance distribution of both... |
| expected.SAD.Guilds.Conditional | Estimate the expected species abundance distribution of both... |
| generate.ESF | Generate community data under the standard neutral model of... |
| generate.Guilds | Generate Artificial data under the GUILDS model |
| generate.Guilds.Cond | Generate Artificial data under the GUILDS model, conditioned... |
| GUILDS-internal | Internal Guilds functions |
| GUILDS-package | Package implementing the Guilds sampling formula for the... |
| logLikelihood.ESF | Likelihood of the Etienne sampling formula |
| logLikelihood.Guilds | Likelihood of the Guilds sampling formula |
| logLikelihood.Guilds.Conditional | Likelihood of the Guilds sampling formula, conditional on... |
| maxLikelihood.ESF | Maximization of the loglikelihood given the standard Neutral... |
| maxLikelihood.Guilds | Maximization of the loglikelihood under the Guilds Model. |
| maxLikelihood.Guilds.Conditional | Maximization of the loglikelihood under the Guilds Model,... |
| preston_plot | Barplot in Preston style of an abundance dataset |
