compare_GWASs: Compare summary statistics of GWAS result files

In GWASinspector: Comprehensive and Easy to Use Quality Control of GWAS Results

Compare summary statistics of GWAS result files

Description

This function compares the key metrics of previously inspected files. This allows the user to check if the results of these studies are comparable (important when running a meta-analysis) and that there are no significant anomalies.

Usage

compare_GWASs(input.file.list, output.path)

Arguments

input.file.list	list, full path of the Inspector result files. This file is in RDS format and will be generated for each GWAS result file during the inspection algorithm.
output.path	character, full path to the folder where output files should be saved.

Value

Key metrics report and plots of previously inspected files are generated and saved in the specified output folder.

GWASinspector documentation built on Sept. 28, 2023, 1:06 a.m.