API for GeRnika
Simulation, Visualization and Comparison of Tumor Evolution Data
| Global functions | |
|---|---|
| .distribute_freqs | Source code |
| B_mats | Man page |
| B_to_phylotree | Man page Source code |
| Phylotree-class | Man page |
| add_children | Source code |
| add_noise | Man page |
| calc_clone_proportions | Source code |
| clone_to_gene | Source code |
| combine_trees | Man page Source code |
| create_B | Man page Source code |
| create_F | Man page |
| create_U | Man page Source code |
| create_instance | Man page |
| create_phylotree | Man page Source code |
| create_tree | Source code |
| equals | Man page Source code |
| find_common_subtrees | Man page Source code |
| gene_to_clone | Source code |
| get_ascendants | Source code |
| get_ascendants_idx | Source code |
| get_children | Source code |
| get_children_idx | Source code Source code |
| get_clones | Source code |
| get_depth | Source code |
| get_descendants | Source code |
| get_descendants_idx | Source code |
| get_distance | Source code |
| get_genes | Source code |
| get_leaves | Source code |
| get_mutation_idx | Source code |
| get_parent | Source code |
| get_parent_idx | Source code Source code |
| get_parents | Source code |
| get_root_clone | Source code |
| get_root_mutation | Source code |
| is_leave | Source code |
| merge_graphs | Source code |
| palettes | Man page |
| phylotree_to_B | Source code |
| phylotree_to_tree | Source code |
| place_clones_space | Source code |
| plot | Man page |
| plot,Phylotree-method | Man page |
| plot_p | Source code |
| plot_phylotree | Source code |
| plot_proportions | Man page Source code |
| rdir | Source code |
| sample.vec | Source code |
