calculateAlleleFreqs: Calculate Allele Frequencies from Genotype Matrix
In GenoPop: Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files
View source: R/convert_gt_data.R
calculateAlleleFreqs R Documentation
Calculate Allele Frequencies from Genotype Matrix
Description
This function calculates allele frequencies from a genotype matrix (sep_gt) for each variant.
It is designed to be used within the batch or window processing framework of process_vcf_in_batches and process_vcf_in_windows.
Usage
calculateAlleleFreqs(sep_gt)
Arguments
sep_gt
Genotype matrix similar to the @sep_gt slot of a vcfR object.
Value
A data frame containing allele frequencies for each variant.
GenoPop documentation built on April 3, 2025, 9:51 p.m.
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View source: R/convert_gt_data.R
| calculateAlleleFreqs | R Documentation |
Calculate Allele Frequencies from Genotype Matrix
Description
This function calculates allele frequencies from a genotype matrix (sep_gt) for each variant.
It is designed to be used within the batch or window processing framework of process_vcf_in_batches and process_vcf_in_windows.
Usage
calculateAlleleFreqs(sep_gt)
Arguments
sep_gt |
Genotype matrix similar to the |
Value
A data frame containing allele frequencies for each variant.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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