Clustering: Clustering function

In GenoTriplo: Genotyping Triploids (or Diploids) from Luminescence Data

Clustering function

Description

Clustering function to run clustering with no parallelization process nor auto save

Usage

Clustering(dataset, nb_clust_possible, n_iter = 5, Dmin = 0.28)

Arguments

dataset	dataset with Contrast and SigStren for each individuals and each markers
nb_clust_possible	number of cluster possible (ploidy+1)
n_iter	number of iterations to perform for clustering
Dmin	minimal distance between two clusters

Value

list of results of clustering

Examples

data(GenoTriplo_to_clust)
ploidy=3
res = Clustering(dataset=GenoTriplo_to_clust,
                 nb_clust_possible=ploidy+1,n_iter=5)

GenoTriplo documentation built on May 29, 2024, 11:22 a.m.