importXML: importXML

Description Usage Arguments Details Value Author(s)

View source: R/importXML.R

Description

Import an Blast XML file

Usage

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importXML(folder, seqNames = NULL, which = NULL, idTH = 0.8,
  verbose = TRUE)

Arguments

folder

Character, folder path

seqNames

Names of sequences

which

Which sequences to import

idTH

Use the threshold as cut-off

verbose

Logical, verbose output

Details

This function imports XML files as provided as Blast output, it is mainly aimied to import the output of the hoardeR package

Value

An XML object

Author(s)

Daniel Fischer


GenomicTools.fileHandler documentation built on March 26, 2020, 7:23 p.m.