GeoDE: A geometrical Approach to Differential expression and gene-set enrichment

Given expression data this package calculate a multivariate geometrical characterization of the differential expression and can also perform gene-set enrichment.

Install the latest version of this package by entering the following in R:
install.packages("GeoDE")
AuthorNeil R. Clark and Avi Ma'ayan
Date of publication2014-07-31 07:17:53
MaintainerNeil Clark <neil.clark@mssm.edu>
LicenseGPL-2
Version1.0

View on CRAN

Files

NAMESPACE
data
data/microRNA.gmt.RData
data/Chromosome_location.gmt.RData
data/KEGG_pathways.gmt.RData
data/Cancer_Cell_Line_Encyclopedia.gmt.RData
data/GeneOntology_MF.gmt.RData
data/example_expression_data.RData
data/HMDB_Metabolites.gmt.RData
data/OMIM_disease_genes.gmt.RData
data/NCI60.gmt.RData
data/MGI_MP_top3.gmt.RData
data/OMIM_Expanded.gmt.RData
data/AllGMTfiles.RData
data/Reactome_pathways.gmt.RData
data/PPI_Hub_Proteins.gmt.RData
data/ChEA.gmt.RData
data/GeneOntology_CC.gmt.RData
data/Genome_Browser_PWMs.gmt.RData
data/Pfam-InterPro-domains.gmt.RData
data/NURSA-IPMS.gmt.RData
data/KEA.gmt.RData
data/WikiPathways_pathways.gmt.RData
data/Human_Gene_Atlas.gmt.RData
data/BioCarta_pathways.gmt.RData
data/VirusMINT.gmt.RData
data/CORUM.gmt.RData
data/datalist
data/GeneSigDB.gmt.RData
data/GeneOntology_BP.gmt.RData
data/example_gammas.RData
data/TF_PPIs.gmt.RData
data/MGI_MP_top4.gmt.RData
data/Mouse_Gene_Atlas.gmt.RData
data/example_sampleclass.RData
R
R/ChDir-06.R
MD5
DESCRIPTION
man
man/AllGMTfiles.Rd man/example_gammas.Rd man/GeoDE-package.Rd man/example_sampleclass.Rd man/gmt.Rd man/example_expression_data.Rd man/PAEAAnalysis.Rd man/chdirAnalysis.Rd man/multigmtPAEAAnalysis.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.