SimTangleData: Simulation of data

In GeoGenetix: Quantification of the effect of geographic versus environmental isolation on genetic differentiation

Description

Simulate data under the model assumed by the MCMC inference program

Usage

SimTangleData(mod, theta, nsite, nloc, nind,nalM, nalm, var.par, scale.par)

Arguments

mod	A character string equal to "G+E", "G", "E"
theta	A vector of length 5 containing values for (alpha,beta_G,beta_E,gamma,delta)
nsite	Number of geographical locations
nloc	Number of loci
nind	Haploid population size at each combination location x locus
nalM	Maximum number of alleles over the various loci
nalm	Minimum number of alleles over the various loci
var.par	Variance of the random field model for the environmental variable
scale.par	Scale parameter in the exponential covariance of the random field model for the environmental variable

Value

A list containing genotypes, geographical distance, environmental distances, model and parameters.

Author(s)

Filippo Botta

Examples

data(toydata,package='GeoGenetix')

GeoGenetix documentation built on May 1, 2019, 10:56 p.m.