Description Usage Arguments Details Value Examples

View source: R/Plot_Rarefaction.R

Plots the measured value versus rarefied samples or percent error of estimates (PEE) of a rarefied samples for a geographic range measure

1 2 | ```
Plot_Rarefaction(Mes1_AllTaxa, Mes2_AllTaxa, symbol = 20, measure = 2,
SampSize = 1, color = "black")
``` |

`Mes1_AllTaxa` |
- Vector list of measured values for multiple taxa, from the GeoRarefaction_MultiTaxa function, or PEE calculations for multiple taxa, from from PEE_MultiTaxa function |

`Mes2_AllTaxa` |
- Vector list of measured values for multiple taxa, output from GeoRarefaction_MultiTaxa function |

`symbol` |
- Symbol used for plotting, as per pch graphical parameter |

`measure` |
- Specifies which measure to be plotted, 2=MST 3=CH 4=GCD 5=LatRg 6=LongRg 7=CellCount |

`SampSize` |
- Specifies the index value of the rarefaction sample size from the PEE_AllTaxa parameter |

`color` |
- Specifies the color of symbols being plotted |

For each taxon for a specific geographic range measure using 95 Measure paramter is the ordinal position of the measure of interest 2=MST,3=CH,4=GCD,5=LatRg,6=LongRg,7=CellCount SampSize parameter indicates the index column position of steps size, default is first column (all points)

Returns a plot of measured geographic range values or PEE versus true value for a specific geographic range measure at varying sample sizes

1 2 3 4 5 6 7 8 | ```
## Not run:
data(BivalvePBDB)
BivalveMatrix<-CoordList_PBDB(BivalvePBDB)
BivalveGeo<-GeoRarefaction_MultiTaxa(nLocCut=20,OccMatrix=BivalveMatrix,TaxaStart=3,replacePts=TRUE)
BivalvePEE<-PEE_MultiTaxa(BivalveGeo)
Plot_Rarefaction(BivalvePEE,BivalveGeo,symbol=20,measure=2,SampSize=2)
## End(Not run)
``` |

GeoRange documentation built on June 20, 2017, 9:03 a.m.

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