NEWS.md

In GeometricMorphometricsMix: Heterogeneous Methods for Shape and Other Multidimensional Data

GeometricMorphometricsMix 0.6.1.1

• Improved permutation loop in pls(), which now reduces the memory footprint of permutation testing
• Added optional parallelism to pls() via the future/future.apply framework. Permutation tests can now exploit multiple workers when a future::plan() with more than one worker is active.
• Made Kmultparallel() and its S3 methods (print.parallel_Kmult(), plot.parallel_Kmult(), summary.parallel_Kmult()) defunct. All implementation code and examples have been removed; calling these functions now signals an informative error. Users should migrate to geomorph::physignal() for computing phylogenetic signal (parallel implementation is nowadays trivial).
• Moved ape from Depends to Suggests since no remaining exported function uses ape directly.

GeometricMorphometricsMix 0.6.1.0

• Deprecated Kmultparallel() and its S3 methods (print.parallel_Kmult(), plot.parallel_Kmult(), summary.parallel_Kmult()). These functions will be removed in a future version. Users should migrate to geomorph::physignal() for computing phylogenetic signal.

GeometricMorphometricsMix 0.6.0.1

• Updated DESCRIPTION to contain more information and relevant references
• Replaced \dontrun{} with \donttest{} in examples for functions where examples are executable but take >5 seconds or require Suggests packages
• Both changes above made following the kind input by CRAN reviewers
• Modified some examples of print, summary, and plot methods

GeometricMorphometricsMix 0.6.0.0

• Cleaned up code (e.g., line length)
• Fixed internal use of sapply()
• Removed previously defunct functions rarefied_convex_hull() and rarefied_disparty()

GeometricMorphometricsMix 0.5.1.0

• Modified RVcomparison() to accept grouped data with pairwise comparisons
• Improved input validation for RV coefficient functions

GeometricMorphometricsMix 0.5.0.1

• Fixed scaling issue in pls_major_axis()

GeometricMorphometricsMix 0.5

• Enhanced RVrarefied() to support multiple groups and customizable confidence intervals
• Added plotting functions for resampling estimates
• Changed deprecated disparity functions to defunct
• Created unit tests for RVrarefied()

GeometricMorphometricsMix 0.4.3.0

• Switched Kmultparallel() to use future_lapply() for improved parallelization
• Parallelized bootstrapping and rarefaction analyses

GeometricMorphometricsMix 0.4.2.0

• Created general resampling function returning indexes
• Added bootstrap capability at lower sample sizes to disparity_resample()

GeometricMorphometricsMix 0.4.1.0

• Added range reporting option to disparity_resample() when CI=1
• Removed input validation from main disparity function

GeometricMorphometricsMix 0.4

• Added new datasets for examples and vignettes

GeometricMorphometricsMix 0.3

• Added support for multiple datasets and tree sets to Kmultparallel()
• Migrated Kmultparallel() to use future for parallelism
• Added S3 plot method for Kmultparallel() output with density plots
• Removed parallelsugar from suggested packages

GeometricMorphometricsMix 0.2

• Updated package description and title to reflect heterogeneous methods
• Introduced new disparity resampling function with S3 methods
• Deprecated old disparity resampling functions
• Created vignette for disparity analyses

GeometricMorphometricsMix documentation built on April 18, 2026, 1:06 a.m.