Maize_wqs: The Wisconsin Quality Synthetic (WQS) maize population...

In Ghat: Quantifying Evolution and Selection on Complex Traits

The Wisconsin Quality Synthetic (WQS) maize population datasets.

Description

The Wisconsin Quality Synthetic (WQS) maize population datasets.

Usage

Maize_wqs

Format

A list of 4 data sets:

Dataset-1

Data frame including all SNP effects and changes in allele frequencies between cycle 2 and 5.

Dataset-2

BLUP breeding values for Acid Detergent Fiber (ADF) involving 5 generations of selection.

Dataset-3

Map file: Each line of the Map file describes a single marker and must contain at least three columns. 1: chromosome number; 2: SNP (snp id); 3: SNP position (in base-pairs (bp)).

Dataset-4

Maize Genotype (Illumina MaizeSNP50 BeadChip); an Infinium HD assay (Illumina, Inc. San Diego, CA). 10,017 SNP markers (0,1 and 2) after filtration, distributed across the maize genome (Ganal et al.2011).

Source

Lorenz, A. J., Beissinger, T.M., Rodrigues, R., de Leon, N. 2015. Selection for silage yield and composition did not affect genomic diversity within the Wisconsin Quality Synthetic maize population. Genes Genomes Genetics. DOI: 10.1534/g3.114.015263.

Examples

maize <- Maize_wqs[[1]]
phe   <- Maize_wqs[[2]]
map   <- Maize_wqs[[3]]
gen   <- Maize_wqs[[4]]

Ghat documentation built on Dec. 28, 2022, 1:13 a.m.