refNNa: R function for refined Nearest Neighbor analysis of point...

In GmAMisc: 'Gianmarco Alberti' Miscellaneous

R function for refined Nearest Neighbor analysis of point patterns (G function)

Description

The function allows to perform the refined Nearest Neighbor analysis of point patterns.

Usage

refNNa(
  feature,
  studyplot = NULL,
  buffer = 0,
  B = 200,
  cov.var = NULL,
  order = 1
)

Arguments

feature	Feature dataset (of point type).
studyplot	Shapefile (of polygon type) representing the study area; if not provided, the study area is internally worked out as the convex hull enclosing the input feature dataset.
buffer	Add a buffer to the studyplot (0 by default); the unit depends upon the units of the input data.
B	Number of randomizations to be used (200 by default).
cov.var	Numeric covariate (of RasterLayer class) (NULL by default).
order	Integer indicating the kth nearest neighbour (1 by default).

Details

The function plots the cumulative Nearest Neighbour distance, along with an acceptance interval (with significance level equal to 0.05; sensu Baddeley et al., "Spatial Point Patterns. Methodology and Applications with R", CRC Press 2016, 208) based on B (set to 200 by default) realizations of a Complete Spatial Random process. The function also allows to control for a first-order effect (i.e., influence of an underlaying numerical covariate) while performing the analysis. The covariate must be of 'RasterLayer class'.

The function uses a randomized approach to build the mentioned acceptance interval whereby cumulative distributions of average NN distances of random points are computed across B iterations. In each iteration, a set of random points (with sample size equal to the number of points of the input feature) is drawn.

Thanks are due to Dason Kurkiewicz for the help provided in writing the code to calculate the acceptance interval.

See Also

NNa

Examples

data(springs)

#produces a plot representing the cumulative nearest neighbour distance distribution;
#an acceptance interval based on 19 randomized simulations is also shown.
refNNa(springs, B=19)

#load the Startbucks datset
data(Starbucks)

#load the raster representing the numerical covariate
data(popdensity)

#perform the analysis, controlling for the 1st order effect
refNNa(Starbucks, cov.var=popdensity, B=19)

GmAMisc documentation built on March 18, 2022, 6:32 p.m.