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GrammR: Graphical Representation and Modeling of Metagenomic Reads
Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison.
Getting started
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Package details |
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| Author | Deepak Nag Ayyala [aut, cre], Shili Lin [aut] |
| Maintainer | Deepak Nag Ayyala <deepaknagayyala@gmail.com> |
| License | LGPL-3 |
| Version | 1.1.0 |
| URL | https://www.r-project.org http://www.stat.osu.edu/~statgen/SOFTWARE/GrammR/ |
| Package repository | View on CRAN |
| Installation |
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