NEWS.md

In Greg: Regression Helper Functions

NEWS for the Greg package

Changes for 2.0.2

• Fixed minor documentation issue with hidden functions

Changes for 2.0.1

• Improved forestplot integration so that fp_... functions are available (see example for forestplotRegrObj)

Changes for 2.0.0

• BREAKING: Refactored the forestplogRegrObj function to S3-format
• Added broom::tidy for rms-models
• Updated to new forestplot API together with some general improvements to the forestplot functions
• Dropped magrittr in favor of R native-pipe
• Converted examples to tidyverse style

Changes for 1.4.1

• Fix for updated survival package with a more consistent naming (3.4-0)
• Fix for plotHR axes & bty and improved example with dplyr syntax
• Fix for bad offset() handling, was ignored in getCrudeAndAdjusted unless presented as an offset= parameter.

Changes for 1.4.0

• The plotHR has now a more elegant plot S3-function separating the preparing of the plot and the actual output (Note: if called within a loop you now need to call print/plot on the returned object)

Changes for 1.3.4

• Fix for htmlTable 2.0 which means that the css.group option has been dropped in favor of the new theming & addHtmlTableStyle function. See example and vignette for instructions on how-to.

Changes for 1.3.3

• Fix for new handling of data.frames in next R version

Changes for 1.3

• Fix vignette bug
• Fixed CRAN package names
• Fix bug due to change in survival::coxph

Changes for 1.2

• Fixed spelling errors, travis package check, added tests for coverage and other things related to CRAN submission
• Added a timeSplitter for making time splits through the Epi::Lexis object simpler
• Added a check for null as input parameter to printCrudeAndAdjusted
• Added a subset function for get/printCrudeAndAdjusted
• Updated the test cases
• The reference now has the same number of digits as the rest of the coefficients
• Added htmlTable.printCrudeAndAdjusted for more flexible handling

Changes for 1.1

• The printCrudeAndAdjusted calls now the correct print version
• Added vignette for basic use cases
• Fixed non-linearity
• Added options-alternative to tailor printCrudeAndAdjusted output
• Fixed issue #5
• Fixed tspanner handling for printCrudeAndAdjustedModel
• Bug when with descriptive stats due to missing misspelled (useNa instead of useNA)
• Added a rbind for printCrudeAndAdjusted
• Added handling of missing variable for the outcome estimator
• Fixed simpleRmsAnova
• Fixed getModelData with subsetting arguments not being constants
• All show_missing are now useNA to comply with main package standards
• A few bug fixes

Changes for 1.0.0

• Changed the desc_ arguments into a list using the caDescribeOpts
• Refactored major parts of the printCrudeAndAdjusted
• Changed to use model.frame() under the hood - hopefully stabilizing the functions as it uses a more standard R-approach
• The update() now actively runs under the model environment
• The plotHR is updated and can now plot contrasts if provided a rms-package regression allowing for efficient comparison of multiple models. Internal functions have also been externalized.
• All current unit tests now pass and several new ones have been added
• Implemented DRY roxygen2 code
• The getCrudeAndAdjusted now retains cluster and stratas - there are options for leaving these out to retain old behavior
• The getCrudeAndAdjusted now allows for selecting variables. The printCrudeAndAdjusted now passes on the order option when variable selection is of interest.
• Cleaned variables for the forestplot2 functions
• Added the addNonlinearity that adds non-linearity for a variable if it finds support for it in the data.

Changes for 0.7.1

• Internalized some of the private function documentation
• Improved the outcome extractor function and added test cases

Changes for 0.7.0

• Major remake of the print-/getCrudeAndAdjusted so that they depend on prMapVariable2Name and everything is now centered around the variables
• The printCrudeAndAdjustedModel no longer capitalizes the first letter in order to allow all lower case var names
• Added imputation compatibility with the Hmisc::fit.mult.impute function
• Added multiple test cases for stability

Changes for 0.6.1

• Changed to semantic version numbering
• Fixed bug for printCrudeAndAdjusted when using matrix from the getC&A
• Fixed bug when boolean desc_column was generated
• Added stop() when using descriptive column without add_refrerences

Changes for 0.6.0.1

• The getCrudeAndAdjusted now handles the intercept term better for naming the rows (Thanks to Victor)
• The getCrudeAndAdjusted/printCrudeAndAdjusted now use 'model' instead 'fit' for the model regression object name
• The printCrudeAndAdjusted now calls print on the htmlTable_str object so that it appears as expected
• Added unit tests

Changes for 0.6.0.0

• The split from the Gmisc package

Greg documentation built on May 29, 2024, 3:57 a.m.