ghmap: Grouphmap: Automated one-step common analysis of Batch...

In Grouphmap: 'Grouphmap' is an Automated One-Step Common Analysis of Batch Expression Profile

Grouphmap: Automated one-step common analysis of Batch expression profile

Description

Grouphmap: Automated one-step common analysis of Batch expression profile

Usage

ghmap(Path, conRep, treRep, OrgDb, TYPE, UP = TRUE, cutree, TOP)

Arguments

Path	"File storage path." Two groups are one file, and the control group should before the treatment group.
conRep	Number of repetitions in control group.
treRep	Number of repetitions in treatment group.
OrgDb	org.Mm.eg.db, org.Hs.eg.db, and org.Sc.sgd.db. Please library().
TYPE	"SYMBOL","ENSEMBOL"...
UP	up is TRUE and down is FALSE
cutree	heatmap can be devided multiple modules that make the functional difference and similarity of those group to be obvious
TOP	the numeric.Such as 10 is the top 10 of GO analysis in each file.

Value

p1

Examples

library(org.Mm.eg.db)
Path<-system.file("extdata", package = "Grouphmap")
ghmap(Path,2,2,org.Mm.eg.db,"ENSEMBL",FALSE,2,10)

Grouphmap documentation built on Sept. 4, 2023, 5:07 p.m.