volcanoGsea: volcanoGsea

In GseaVis: Implement for 'GSEA' Enrichment Visualization

volcanoGsea

Description

volcanoGsea

Usage

volcanoGsea(
  data = NULL,
  NES.cutoff = 1,
  pvalue.cutoff = NULL,
  p.adjust.CUTOFF = 0.05,
  nudge.y = c(0, 0),
  topN = 5,
  point.size = 3,
  point.color = c("#CC3333", "#CCCCCC", "#0099CC"),
  ...
)

Arguments

data	GSEA enrich object from clusterProfiler, defalut is NULL.
NES.cutoff	NES cutoff to select significant terms, defalut is 1.
pvalue.cutoff	pvalue cutoff to select significant terms, defalut is NULL.
p.adjust.CUTOFF	adjusted pvalue cutoff to select significant terms, defalut is 0.05.
nudge.y	y shift to ajust label, defalut is c(0,0).
topN	top term to show, defalut is 5.
point.size	point size, defalut is 3.
point.color	point color, defalut is c('#CC3333','#CCCCCC','#0099CC').
...	other arguments passed by geom_text_repel.

Value

a ggplot object.

Author(s)

Jun Zhang

GseaVis documentation built on Dec. 21, 2022, 1:37 a.m.