HACSim: Iterative Extrapolation of Species' Haplotype Accumulation Curves for Genetic Diversity Assessment

Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008>, Phillips et al. (2019) <doi:10.1002/ece3.4757> and Phillips et al. (2020) <doi: 10.7717/peerj-cs.243>. Any genomic marker can be targeted to assess likely required specimen sample sizes. The method is well-suited to assess sampling sufficiency for DNA barcoding initiatives.

Package details

AuthorJarrett D. Phillips [aut, cre], Steven H. French [ctb]
MaintainerJarrett D. Phillips <phillipsjarrett1@gmail.com>
LicenseGPL-3
Version1.0.5
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("HACSim")

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HACSim documentation built on Jan. 8, 2020, 1:07 a.m.