heat_map_tp_maxuptake_proc: Preparatory function for heat map of maximum procent...

In HDXBoxeR: Analysis of Hydrogen-Deuterium Exchange Mass-Spectrometry Data

Preparatory function for heat map of maximum procent deuteration per residue.

Description

Returns heat map

Usage

heat_map_tp_maxuptake_proc(
  df,
  dfup,
  pv,
  sd,
  ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
  pv_cutoff = 0.01,
  replicates = 3
)

Arguments

df	average data frame for procent deuteration. Generated using ave_timepoint() function.
dfup	average data frame for deuteration uptake. Generated using ave_timepoint() function.
pv	pvalues dataframes calculated using pv_timepoint() function
sd	standard deviation data.frame generated using sd_timepoint function
ranges	ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf)
pv_cutoff	p-value cutoff here set up to 0.01
replicates	number of replicates in sample. Default set to 3.

Value

Maximum uptake heat map for timepoints

HDXBoxeR documentation built on Sept. 11, 2024, 8:40 p.m.