Man pages for HEMDAG
Hierarchical Ensemble Methods for Directed Acyclic Graphs

ancestorsBuild ancestors
AUPRC.single.classAUPRC single class
AUPRC.single.over.classesAUPRC over classes
AUROC.single.classAUROC single class
AUROC.single.over.classesAUROC over classes
check.annotation.matrix.integrityAnnotation matrix checker
check.DAG.integrityDAG checker
childrenBuild children
compute.flipped.graphFlip Graph
constraints.matrixConstraints Matrix
descendantsBuild descendants
DESCENSDESCENS variants
DESCENS.CVDESCENS cross-validation
DESCENS.HOLDOUTDESCENS holdout
distances.from.leavesDistances from leaves
Do.descens.threshold.freeDESCENS vanilla
Do.descens.threshold.free.holdoutDESCENS vanilla holdout
do.edges.from.HPO.oboParse an HPO OBO file
Do.FLAT.scores.normalizationFlat scores normalization
Do.full.annotation.matrixDo full annotations matrix
Do.heuristic.methodsDo Heuristic Methods
Do.heuristic.methods.holdoutDo Heuristic Methods holdout
Do.HTDHTD-DAG vanilla
Do.HTD.holdoutHTD-DAG holdout
do.subgraphBuild subgraph
do.submatrixBuild submatrix
Do.tpr.threshold.freeTPR-DAG vanilla
Do.tpr.threshold.free.holdoutTPR-DAG vanilla holdout
do.unstratified.cv.dataUnstratified cross-validation
example.datasetsSmall real example datasets
find.best.fBest hierarchical F-score
find.leavesLeaves
full.annotation.matrixFull annotations matrix
graph.levelsBuild Graph Levels
HEMDAG-packageHEMDAG: Hierarchical Ensemble Methods for Directed Acyclic...
Heuristic-MethodsObozinski Heuristic Methods
hierarchical.checkersHierarchical constraints cheker
HTD-DAGHTD-DAG
Multilabel.F.measureMultilabel F-measure
normalize.maxMax normalization
parentsBuild parents
read.graphRead a directed graph from a file
read.undirected.graphRead an undirected graph from a file
root.nodeRoot node
specific.annotation.listSpecific annotations list
specific.annotation.matrixHPO specific annotations matrix
stratified.cross.validationStratified cross validation
TPR-DAGTPR-DAG variants
TPR.DAG.CVTPR-DAG cross-validation
TPR.DAG.HOLDOUTTPR-DAG holdout
transitive.closure.annotationsTransitive closure of annotations
tupla.matrixTupla Matrix
weighted.adjacency.matrixWeighted Adjacency Matrix
write.graphWrite a directed graph on file
HEMDAG documentation built on Nov. 17, 2017, 7:23 a.m.