Man pages for HEMDAG
Hierarchical Ensemble Methods for Directed Acyclic Graphs

ancestorsBuild ancestors
AUPRCAUPRC measures
AUROCAUROC measures
check.annotation.matrix.integrityAnnotation matrix checker
check.DAG.integrityDAG checker
childrenBuild children
compute.flipped.graphFlip Graph
constraints.matrixConstraints Matrix
descendantsBuild descendants
DESCENSDESCENS variants
distances.from.leavesDistances from leaves
do.edges.from.HPO.oboParse an HPO OBO file
Do.flat.scores.normalizationFlat scores normalization
Do.full.annotation.matrixDo full annotations matrix
Do.heuristic.methodsDo Heuristic Methods
Do.heuristic.methods.holdoutDo Heuristic Methods holdout
Do.HTDHTD-DAG vanilla
Do.HTD.holdoutHTD-DAG holdout
do.subgraphBuild subgraph
do.submatrixBuild submatrix
do.unstratified.cv.dataUnstratified cross-validation
example.datasetsSmall real example datasets
find.best.fBest hierarchical F-score
find.leavesLeaves
FMMCompute Multilabel F-measure
full.annotation.matrixFull annotations matrix
graph.levelsBuild Graph Levels
HEMDAG-packageHEMDAG: Hierarchical Ensemble Methods for Directed Acyclic...
Heuristic-MethodsObozinski Heuristic Methods
hierarchical.checkersHierarchical constraints cheker
HTD-DAGHTD-DAG
Multilabel.F.measureMultilabel F-measure
normalize.maxMax normalization
parentsBuild parents
PXRPrecision at fixed Recall level
read.graphRead a directed graph from a file
read.undirected.graphRead an undirected graph from a file
root.nodeRoot node
scores.normalizationScores Normalization Function
specific.annotation.listSpecific annotations list
specific.annotation.matrixHPO specific annotations matrix
stratified.cross.validationStratified cross validation
TPR-DAGTPR-DAG variants
TPR-DAG-cross-validationTPR-DAG cross-validation experiments
TPR-DAG-holdoutTPR-DAG holdout experiments
TPR-DAG-variantsTPR-DAG Variants
transitive.closure.annotationsTransitive closure of annotations
tupla.matrixTupla Matrix
weighted.adjacency.matrixWeighted Adjacency Matrix
write.graphWrite a directed graph on file
HEMDAG documentation built on May 22, 2018, 1:04 a.m.