HGNChelper: Handy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers.

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Contains functions for identifying and correcting HGNC gene symbols which have been converted to date format by Excel, for reversibly converting between HGNC symbols and valid R names, identifying invalid HGNC symbols and correcting synonyms and outdated symbols which can be mapped to an official symbol.

Author
Levi Waldron and Markus Riester
Date of publication
2014-12-04 00:33:54
Maintainer
Levi Waldron <lwaldron.research@gmail.com>
License
GPL (>= 2.0)
Version
0.3.1
URLs

View on CRAN

Man pages

affyToR
function to convert Affymetrix probeset identifiers to valid...
checkGeneSymbols
function to identify outdated or Excel-mogrified gene symbols
findExcelGeneSymbols
function to identify Excel-mogrified gene symbols
HGNChelper-package
Handy functions for working with HGNC gene symbols and...
hgnc.table
All current and withdrawn HGNC symbols.
rToAffy
function to convert the output of affyToR back to the...
rToSymbol
function to reverse the conversion made by symbolToR
symbolToR
function to *reversibly* convert HGNC gene symbols to valid R...

Files in this package

HGNChelper
HGNChelper/inst
HGNChelper/inst/hgncLookup.R
HGNChelper/inst/extdata
HGNChelper/inst/extdata/valid_vs_year.R
HGNChelper/inst/extdata/mog_map.csv
HGNChelper/inst/extdata/genenames_org.rda
HGNChelper/tests
HGNChelper/tests/symbolToR.R
HGNChelper/tests/checkGeneSymbols.R
HGNChelper/tests/rToSymbol.R
HGNChelper/NAMESPACE
HGNChelper/CHANGELOG
HGNChelper/data
HGNChelper/data/hgnc.table.rda
HGNChelper/R
HGNChelper/R/rToAffy.R
HGNChelper/R/findExcelGeneSymbols.R
HGNChelper/R/affyToR.R
HGNChelper/R/symbolToR.R
HGNChelper/R/checkGeneSymbols.R
HGNChelper/R/rToSymbol.R
HGNChelper/MD5
HGNChelper/build
HGNChelper/build/HGNChelper.pdf
HGNChelper/DESCRIPTION
HGNChelper/man
HGNChelper/man/findExcelGeneSymbols.Rd
HGNChelper/man/hgnc.table.Rd
HGNChelper/man/HGNChelper-package.Rd
HGNChelper/man/rToAffy.Rd
HGNChelper/man/checkGeneSymbols.Rd
HGNChelper/man/affyToR.Rd
HGNChelper/man/rToSymbol.Rd
HGNChelper/man/symbolToR.Rd