HGNChelper: Handy Functions for Working with HGNC Gene Symbols and Affymetrix Probeset Identifiers

Contains functions for identifying and correcting HGNC gene symbols which have been converted to date format by Excel, for reversibly converting between HGNC symbols and valid R names, identifying invalid HGNC symbols and correcting synonyms and outdated symbols which can be mapped to an official symbol.

AuthorLevi Waldron and Markus Riester
Date of publication2017-01-26 12:03:15
MaintainerLevi Waldron <lwaldron.research@gmail.com>
LicenseGPL (>= 2.0)
Version0.3.4
https://bitbucket.org/lwaldron/hgnchelper

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Files

HGNChelper
HGNChelper/inst
HGNChelper/inst/hgncLookup.R
HGNChelper/inst/extdata
HGNChelper/inst/extdata/valid_vs_year.R
HGNChelper/inst/extdata/mog_map.csv
HGNChelper/inst/extdata/genenames_org.rda
HGNChelper/tests
HGNChelper/tests/symbolToR.R
HGNChelper/tests/checkGeneSymbols.R
HGNChelper/tests/rToSymbol.R
HGNChelper/NAMESPACE
HGNChelper/CHANGELOG
HGNChelper/data
HGNChelper/data/hgnc.table.rda
HGNChelper/R
HGNChelper/R/rToAffy.R HGNChelper/R/findExcelGeneSymbols.R HGNChelper/R/affyToR.R HGNChelper/R/symbolToR.R HGNChelper/R/checkGeneSymbols.R HGNChelper/R/rToSymbol.R
HGNChelper/MD5
HGNChelper/build
HGNChelper/build/HGNChelper.pdf
HGNChelper/DESCRIPTION
HGNChelper/man
HGNChelper/man/findExcelGeneSymbols.Rd HGNChelper/man/hgnc.table.Rd HGNChelper/man/HGNChelper-package.Rd HGNChelper/man/rToAffy.Rd HGNChelper/man/checkGeneSymbols.Rd HGNChelper/man/affyToR.Rd HGNChelper/man/rToSymbol.Rd HGNChelper/man/symbolToR.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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