himaDat: Example datasets for HIMA demo

In HIMA: High-Dimensional Mediation Analysis

Example datasets for HIMA demo

Description

A list dataset containing datasets for various scenarios of HIMA. Each dataset contains a phenotype data frame and a high-dimension mediator data matrix. The datasets are simulated using parameters generated from real datasets. The code used to generate the data can be found in /inst/script folder of the package.

Usage

himaDat

Format

An object of class list of length 5.

Details

Example dataset 1 for HIMA: Continuous outcome

• Treatment: treated (value = 1) or not treated (value = 0)

• Outcome: outcome of the treatment- a normally distributed continuous variable

• Sex: female (value = 1) or male (value = 0)

• Age: Age of the participant

Example dataset 2 for HIMA: Binary outcome

• Treatment: treated (value = 1) or not treated (value = 0)

• Disease: diseased (value = 1) or healthy (value = 0)

• Sex: female (value = 1) or male (value = 0)

• Age: Age of the participant

Example dataset 3 for HIMA: Survival data outcome

• Treatment: treated (value = 1) or not treated (value = 0)

• Status: Status indicator: dead (value = 1) or alive (value = 0)

• Time: time to event

• Sex: female (value = 1) or male (value = 0)

• Age: Age of the participant

Example dataset 4 for HIMA: Compositional mediator (e.g., microbiome)

• Treatment: treated (value = 1) or not treated (value = 0)

• Outcome: outcome of the treatment- a normally distributed continuous variable

• Sex: female (value = 1) or male (value = 0)

• Age: Age of the participant

Example dataset 5 for HIMA: High-dimensional quantile mediation analysis

• Treatment: treated (value = 1) or not treated (value = 0)

• Outcome: outcome of the treatment- abnormally distributed continuous variable

• Sex: female (value = 1) or male (value = 0)

• Age: Age of the participant

Value

A list of example datasets for HIMA demo and testing.

HIMA documentation built on Sept. 10, 2023, 5:06 p.m.