himaDat: Example datasets for HIMA demo

In HIMA: High-Dimensional Mediation Analysis

Example datasets for HIMA demo

Description

A list containing datasets for various scenarios of HIMA. Each dataset contains a phenotype data frame and a high-dimension mediator data matrix. The datasets are simulated using parameters generated from real datasets. The code used to generate the data can be found in "/inst/script" folder of the source package.

Usage

himaDat

Format

An object of class list of length 5.

Value

A list of example datasets for HIMA demo and testing.

–>> Example dataset 1 for HIMA: Continuous outcome <<–

Treatment:

treated (value = 1) or not treated (value = 0)

Outcome:

outcome of the treatment- a normally distributed continuous variable

Sex:

female (value = 1) or male (value = 0)

Age:

Age of the participant

–>> Example dataset 2 for HIMA: Binary outcome <<–

Treatment:

treated (value = 1) or not treated (value = 0)

Disease:

diseased (value = 1) or healthy (value = 0)

Sex:

female (value = 1) or male (value = 0)

Age:

Age of the participant

–>> Example dataset 3 for HIMA: Survival data outcome <<–

Treatment:

treated (value = 1) or not treated (value = 0)

Status:

Status indicator: dead (value = 1) or alive (value = 0)

Time:

time to event

Sex:

female (value = 1) or male (value = 0)

Age:

Age of the participant

–>> Example dataset 4 for HIMA: Compositional mediator (e.g., microbiome) <<–

Treatment:

treated (value = 1) or not treated (value = 0)

Outcome:

outcome of the treatment- a normally distributed continuous variable

Sex:

female (value = 1) or male (value = 0)

Age:

Age of the participant

–>> Example dataset 5 for HIMA: High-dimensional quantile mediation analysis <<–

Treatment:

treated (value = 1) or not treated (value = 0)

Outcome:

outcome of the treatment- abnormally distributed continuous variable

Sex:

female (value = 1) or male (value = 0)

Age:

Age of the participant

HIMA documentation built on Sept. 12, 2024, 7:32 a.m.