Description Details Author(s) References Examples
The functions in this package produce a complete set of mortality rates as a function of a combination of HIV prevalence and either life expectancy at birth (e0), child mortality alone (5q0), or child mortality with adult mortality (45q15)
Package: | HIV.LifeTables |
Type: | Package |
Version: | 0.1 |
Date: | 2013-12-02 |
License: | Unlimited |
The central function is hiv.mortmod
which takes prevalence and some mortality indicator (e0, 5q0 alone, or 5q0 with 45q15) to produce set of mortality rates. The user also needs to select a region (Africa or Caribbean) and sex. hiv.mortmod
will also produce a life table based on the estimated mortality rates. mortmod.e0
, mortmod.5q0
, and mortmod.45q15
produce mortality rates for the various input combinations.
David J Sharrow
Maintainer: Dave Sharrow <dsharrow@uw.edu>
Sharrow, David J., Samuel J. Clark, Adrian E. Raftery. 2013 “Modeling Age-Specific Mortality for Countries with a Generalized HIV Epidemic” http://www.iussp.org/en/event/17/programme/paper/3284
1 2 3 | ## produces a life table and mortality rates at 1.5% prevalence,
## life expectancy of 60, for Africa Females
hiv.mortmod(prev=1.5, e0=60, model=1, region=1, sex=1, lt=TRUE)
|
$e0
ex
59.35
$lt.5q0
[1] 0.12132
$lt.45q15
[1] 0.2462393
$lt
Age nax nmx nqx npx ndx lx nLx Tx
[1,] 0 2.5 0.075225512 0.084793459 0.9152065 8479 100000 112718 5934793
[2,] 1 2.5 0.010129540 0.039911727 0.9600883 3653 91521 360604 5822075
[3,] 5 2.5 0.002914778 0.014468457 0.9855315 1271 87868 436162 5461470
[4,] 10 2.5 0.001642622 0.008179518 0.9918205 709 86597 431212 5025308
[5,] 15 2.5 0.002155948 0.010721950 0.9892780 921 85888 427138 4594095
[6,] 20 2.5 0.003335297 0.016538583 0.9834614 1405 84967 421322 4166958
[7,] 25 2.5 0.004452731 0.022018548 0.9779815 1840 83562 413210 3745635
[8,] 30 2.5 0.005252820 0.025923669 0.9740763 2118 81722 403315 3332425
[9,] 35 2.5 0.005791861 0.028545969 0.9714540 2273 79604 392338 2929110
[10,] 40 2.5 0.006256334 0.030799931 0.9692001 2381 77331 380702 2536773
[11,] 45 2.5 0.007132402 0.035037262 0.9649627 2627 74950 368182 2156070
[12,] 50 2.5 0.009135300 0.044656620 0.9553434 3229 72323 353542 1787888
[13,] 55 2.5 0.013015347 0.063025972 0.9369740 4355 69094 334582 1434345
[14,] 60 2.5 0.020095615 0.095671627 0.9043284 6194 64739 308210 1099763
[15,] 65 2.5 0.032423947 0.149963696 0.8500363 8779 58545 270778 791553
[16,] 70 2.5 0.053064313 0.234246270 0.7657537 11658 49766 219685 520775
[17,] 75 2.5 0.086115382 0.354300173 0.6456998 13501 38108 156788 301090
[18,] 80 2.5 0.135882179 0.507134533 0.4928655 12479 24607 91838 144303
[19,] 85 2.5 0.206358260 0.680647972 0.3193520 8255 12128 40002 52465
[20,] 90 2.5 0.298645422 0.854927013 0.1450730 3311 3873 11088 12463
[21,] 95 2.5 0.408724410 1.000000000 0.0000000 562 562 1375 1375
ex
[1,] 59.35
[2,] 63.61
[3,] 62.16
[4,] 58.03
[5,] 53.49
[6,] 49.04
[7,] 44.82
[8,] 40.78
[9,] 36.80
[10,] 32.80
[11,] 28.77
[12,] 24.72
[13,] 20.76
[14,] 16.99
[15,] 13.52
[16,] 10.46
[17,] 7.90
[18,] 5.86
[19,] 4.33
[20,] 3.22
[21,] 2.45
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