Uses likelihood to estimate ancestry and heterozygosity. Evaluates simple hybrid classifications (parentals, F1, F2, backcrosses). Estimates genomic clines.

Author | Ben Fitzpatrick |

Date of publication | 2013-02-16 11:33:02 |

Maintainer | Ben Fitzpatrick <benfitz@utk.edu> |

License | GPL (>= 3) |

Version | 2.0 |

**Bluestone:** Original marker data for hybrid tiger salamander larvae...

**Cline.fit:** Fit alternative cline functions to data from one or more...

**Cline.plot:** Graph genomic clines fit to data

**gcline.fn:** Fit a genomic cline using maximum likelihood

**HIC:** Closed form maximum-likelihood estimates of ancestry and...

**HIC3:** Closed form maximum-likelihood estimates of ancestry and...

**HIclass:** Calculate likelihoods for early generation hybrid genotype...

**HIest:** Find the joint maximum likelihood estimates of ancestry and...

**HIest-package:** Functions for estimating hybrid indices (ancestry and...

**HILL:** Hybrid Index Log Likelihood

**HIsurf:** Describe the joint likelihood surface of ancestry and...

**HItest:** Compare the likelihood of hybrid classification to MLE...

**HItest3:** Compare the likelihood of hybrid classification to MLE...

**longX2:** Longs heterogeneity test for admixture proportions in a...

**spatial.AD:** Simulate admixture in continuous, 2-dimensional space

**spatial.HZ:** Simulate a hybrid zone in continuous, 2-dimensional space

**thirdclass:** Calculate likelihoods for early generation hybrid genotype...

**threeway:** Find joint maximum-likelihood estimates of ancestry and...

HIest

HIest/MD5

HIest/R

HIest/R/threeway.R
HIest/R/thirdclass.R
HIest/R/spatial.HZ.R
HIest/R/spatial.AD.R
HIest/R/LongX2.R
HIest/R/HItest3.R
HIest/R/HItest.R
HIest/R/HIsurf.R
HIest/R/HILL.R
HIest/R/HIest.R
HIest/R/HIclass.R
HIest/R/HIC3.R
HIest/R/HIC.R
HIest/R/gcline.fn.R
HIest/R/Cline.plot.R
HIest/R/Cline.fit.R
HIest/NAMESPACE

HIest/man

HIest/man/threeway.Rd
HIest/man/thirdclass.Rd
HIest/man/spatial.HZ.Rd
HIest/man/spatial.AD.Rd
HIest/man/longX2.Rd
HIest/man/HItest3.Rd
HIest/man/HItest.Rd
HIest/man/HIsurf.Rd
HIest/man/HILL.Rd
HIest/man/HIest.Rd
HIest/man/HIest-package.Rd
HIest/man/HIclass.Rd
HIest/man/HIC3.Rd
HIest/man/HIC.Rd
HIest/man/gcline.fn.Rd
HIest/man/Cline.plot.Rd
HIest/man/Cline.fit.Rd
HIest/man/Bluestone.Rd
HIest/DESCRIPTION

HIest/data

HIest/data/Bluestone.rda

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.