HLMdiag: Diagnostic Tools for Hierarchical (Multilevel) Linear Models

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A suite of diagnostic tools for hierarchical (multilevel) linear models. The tools include not only leverage and traditional deletion diagnostics (Cook's distance, covratio, covtrace, and MDFFITS) but also convenience functions and graphics for residual analysis. Models can be fit using either lmer in the 'lme4' package or lme in the 'nlme' package, but only two-level models fit using lme are currently supported.

Author
Adam Loy <loyad01@gmail.com>
Date of publication
2015-12-12 09:41:00
Maintainer
Adam Loy <loyad01@gmail.com>
License
GPL-2
Version
0.3.1
URLs

View on CRAN

Man pages

adjust_lmList.formula
Fitting Common Models via 'lm'
ahd
Methylprednisolone data
autism
Autism data
case_delete.mer
Case Deletion for 'mer'/'lmerMod' objects
compare_eb_ls
Visually comparing shrinkage and LS estimates
cooks.distance
Influence on fixed effects of HLMs
covratio
Influence on precision of fixed effects in HLMs
diagnostics
Calculating influence diagnostics for HLMs.
dotplot_diag
Dot plots for influence diagnostics
ggplot_qqnorm
Constructing a normal Q-Q plot
group_qqnorm
Overlaying normal Q-Q plots
HLMdiag
Diagnostic tools for hierarchical (multilevel) linear models
HLMresid.mer
Calculating residuals from HLMs
leverage.mer
Leverage for HLMs
LSresids.mer
Calculating least squares residuals
radon
Radon data
rotate_ranef.mer
Calculate s-dimensional rotated random effects
rvc.mer
Relative variance change for HLMs
varcomp.mer
Extracting variance components
wages
Wages for male high school dropouts

Files in this package

HLMdiag
HLMdiag/inst
HLMdiag/inst/CITATION
HLMdiag/src
HLMdiag/src/covtrace.cpp
HLMdiag/src/Makevars
HLMdiag/src/linear_algebra_fnc.cpp
HLMdiag/src/cooksd_subset.cpp
HLMdiag/src/cooksd_obs.cpp
HLMdiag/src/mdffits_subset.cpp
HLMdiag/src/covratio.cpp
HLMdiag/src/Makevars.win
HLMdiag/NAMESPACE
HLMdiag/NEWS
HLMdiag/data
HLMdiag/data/wages.RData
HLMdiag/data/autism.RData
HLMdiag/data/ahd.RData
HLMdiag/data/radon.RData
HLMdiag/R
HLMdiag/R/group_level_residual_functions.R
HLMdiag/R/identification.R
HLMdiag/R/HLMresid.R
HLMdiag/R/quantile_functions.R
HLMdiag/R/radon.R
HLMdiag/R/influence_functions.R
HLMdiag/R/autism.R
HLMdiag/R/rotate_ranefs.R
HLMdiag/R/help.R
HLMdiag/R/utility_functions.R
HLMdiag/R/ahd.R
HLMdiag/R/LSresids.R
HLMdiag/R/diagnostic_functions.R
HLMdiag/R/case_delete.R
HLMdiag/R/plot_functions.R
HLMdiag/R/adjust_formula_lmList.R
HLMdiag/README.md
HLMdiag/MD5
HLMdiag/DESCRIPTION
HLMdiag/man
HLMdiag/man/compare_eb_ls.Rd
HLMdiag/man/cooks.distance.Rd
HLMdiag/man/dotplot_diag.Rd
HLMdiag/man/rotate_ranef.mer.Rd
HLMdiag/man/HLMresid.mer.Rd
HLMdiag/man/HLMdiag.Rd
HLMdiag/man/wages.Rd
HLMdiag/man/case_delete.mer.Rd
HLMdiag/man/adjust_lmList.formula.Rd
HLMdiag/man/LSresids.mer.Rd
HLMdiag/man/radon.Rd
HLMdiag/man/covratio.Rd
HLMdiag/man/diagnostics.Rd
HLMdiag/man/ahd.Rd
HLMdiag/man/leverage.mer.Rd
HLMdiag/man/autism.Rd
HLMdiag/man/ggplot_qqnorm.Rd
HLMdiag/man/varcomp.mer.Rd
HLMdiag/man/group_qqnorm.Rd
HLMdiag/man/rvc.mer.Rd