HSROC: Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect

Implements a model for joint meta-analysis of sensitivity and specificity of the diagnostic test under evaluation, while taking into account the possibly imperfect sensitivity and specificity of the reference test. This hierarchical model accounts for both within and between study variability. Estimation is carried out using a Bayesian approach, implemented via a Gibbs sampler. The model can be applied in situations where more than one reference test is used in the selected studies.

Author
Ian Schiller and Nandini Dendukuri
Date of publication
2015-02-10 00:32:01
Maintainer
Ian Schiller <ian.schiller@clinepi.mcgill.ca>
License
GPL-2
Version
2.1.8
URLs

View on CRAN

Man pages

beta.parameter
A function that returns the shape parameters of the beta...
HSROC
A function for joint meta-analysis of sensitivity and...
HSROCSummary
Summary statistics for HSROC models.
In.house
IN-HOUSE NUCLEIC ACID AMPLIFICATION TESTS (INH) FOR TB...
MRI
MAGNETIC RESONANCE IMAGING TEST (MRI) for evaluation of lymph...
simdata
Simulate a dataset based on a HSROC model

Files in this package

HSROC
HSROC/inst
HSROC/inst/CITATION
HSROC/inst/doc
HSROC/inst/doc/Tutorial.Rtex
HSROC/inst/doc/Tutorial.pdf
HSROC/src
HSROC/src/HSROC.cpp
HSROC/NAMESPACE
HSROC/GPL-2
HSROC/NEWS
HSROC/data
HSROC/data/MRI.rda
HSROC/data/In.house.rda
HSROC/R
HSROC/R/A.fonction.R
HSROC/R/beta.condition.R
HSROC/R/truncunif.R
HSROC/R/pi.beta.R
HSROC/R/B.a1.fonction2.R
HSROC/R/A.eij.fonction.R
HSROC/R/XY.function.R
HSROC/R/REFSTD_6_SP.R
HSROC/R/pi.alpha.R
HSROC/R/f.LAMBDA.R
HSROC/R/limit.theta.R
HSROC/R/REFSTD_5.R
HSROC/R/REFSTD_6_SE.R
HSROC/R/files.remove.R
HSROC/R/Test.R
HSROC/R/f.test.R
HSROC/R/B.a1.fonction.R
HSROC/R/Prob.R
HSROC/R/simdata.R
HSROC/R/exp.b.R
HSROC/R/truncgamma3.R
HSROC/R/Restore.R
HSROC/R/DATA.organizer.R
HSROC/R/truncnorm.R
HSROC/R/REFSTD_3.R
HSROC/R/Initialization.R
HSROC/R/M_H2_IND.R
HSROC/R/REFSTD_1.R
HSROC/R/HSROCSummary.R
HSROC/R/M_H2_IND2.R
HSROC/R/B.fonction.Ind.R
HSROC/R/REFSTD_4.R
HSROC/R/XY.function2.R
HSROC/R/gibbs_sampler_Cpp.R
HSROC/R/truncgamma.R
HSROC/R/f.R
HSROC/R/B.fonction.R
HSROC/R/HSROC.R
HSROC/R/beta.parameter.R
HSROC/R/Which_data.R
HSROC/R/HSROC-internal.R
HSROC/R/B.eij.fonction.R
HSROC/R/f.rij.R
HSROC/R/truncnorm2.R
HSROC/R/REFSTD_2.R
HSROC/R/truncgamma2.R
HSROC/vignettes
HSROC/vignettes/Section_2.PNG
HSROC/vignettes/Section_3_2.PNG
HSROC/vignettes/Section_1.PNG
HSROC/vignettes/Density_refstd.PNG
HSROC/vignettes/Section_4.PNG
HSROC/vignettes/Ref.bib
HSROC/vignettes/Section_3.PNG
HSROC/vignettes/Tutorial.Rtex
HSROC/vignettes/SROC_1.png
HSROC/vignettes/Trace_plot_1_chain_2.PNG
HSROC/vignettes/Trace_plot_refstd.PNG
HSROC/vignettes/Density_2.PNG
HSROC/vignettes/Trace_plot.PNG
HSROC/vignettes/Section_2_2.PNG
HSROC/MD5
HSROC/build
HSROC/build/vignette.rds
HSROC/DESCRIPTION
HSROC/man
HSROC/man/In.house.Rd
HSROC/man/HSROCSummary.Rd
HSROC/man/beta.parameter.Rd
HSROC/man/simdata.Rd
HSROC/man/HSROC.Rd
HSROC/man/MRI.Rd
HSROC/.Rinstignore