HSROC: Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect
Version 2.1.8

Implements a model for joint meta-analysis of sensitivity and specificity of the diagnostic test under evaluation, while taking into account the possibly imperfect sensitivity and specificity of the reference test. This hierarchical model accounts for both within and between study variability. Estimation is carried out using a Bayesian approach, implemented via a Gibbs sampler. The model can be applied in situations where more than one reference test is used in the selected studies.

Browse man pages Browse package API and functions Browse package files

AuthorIan Schiller and Nandini Dendukuri
Date of publication2015-02-10 00:32:01
MaintainerIan Schiller <ian.schiller@clinepi.mcgill.ca>
LicenseGPL-2
Version2.1.8
URL http://www.nandinidendukuri.com/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("HSROC")

Man pages

beta.parameter: A function that returns the shape parameters of the beta...
HSROC: A function for joint meta-analysis of sensitivity and...
HSROCSummary: Summary statistics for HSROC models.
In.house: IN-HOUSE NUCLEIC ACID AMPLIFICATION TESTS (INH) FOR TB...
MRI: MAGNETIC RESONANCE IMAGING TEST (MRI) for evaluation of lymph...
simdata: Simulate a dataset based on a HSROC model

Functions

A.eij.fonction Source code
A.fonction Source code
B.a1.fonction Source code
B.a1.fonction2 Source code
B.eij.fonction Source code
B.fonction Source code
B.fonction.Ind Source code
DATA.organizer Source code
HSROC Man page Source code
HSROCSummary Man page Source code
In.house Man page
Initialization Source code
MRI Man page
M_H2_IND Source code
M_H2_IND2 Source code
Prob Source code
REFSTD_1 Source code
REFSTD_2 Source code
REFSTD_3 Source code
REFSTD_4 Source code
REFSTD_5 Source code
REFSTD_6_SE Source code
REFSTD_6_SP Source code
Restore Source code
Test Source code
Which_data Source code
XY.function Source code
XY.function2 Source code
beta.condition Source code
beta.parameter Man page Source code
exp.b Source code
f Source code
f.LAMBDA Source code
f.rij Source code
f.test Source code
files.remove Source code
gibbs_sampler_Cpp Source code
limit.theta Source code
onAttach Source code
pi.alpha Source code
pi.beta Source code
simdata Man page Source code
truncgamma Source code
truncgamma2 Source code
truncgamma3 Source code
truncnorm Source code
truncnorm2 Source code
truncunif Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/Tutorial.Rtex
inst/doc/Tutorial.pdf
src
src/HSROC.cpp
NAMESPACE
GPL-2
NEWS
data
data/MRI.rda
data/In.house.rda
R
R/A.fonction.R
R/beta.condition.R
R/truncunif.R
R/pi.beta.R
R/B.a1.fonction2.R
R/A.eij.fonction.R
R/XY.function.R
R/REFSTD_6_SP.R
R/pi.alpha.R
R/f.LAMBDA.R
R/limit.theta.R
R/REFSTD_5.R
R/REFSTD_6_SE.R
R/files.remove.R
R/Test.R
R/f.test.R
R/B.a1.fonction.R
R/Prob.R
R/simdata.R
R/exp.b.R
R/truncgamma3.R
R/Restore.R
R/DATA.organizer.R
R/truncnorm.R
R/REFSTD_3.R
R/Initialization.R
R/M_H2_IND.R
R/REFSTD_1.R
R/HSROCSummary.R
R/M_H2_IND2.R
R/B.fonction.Ind.R
R/REFSTD_4.R
R/XY.function2.R
R/gibbs_sampler_Cpp.R
R/truncgamma.R
R/f.R
R/B.fonction.R
R/HSROC.R
R/beta.parameter.R
R/Which_data.R
R/HSROC-internal.R
R/B.eij.fonction.R
R/f.rij.R
R/truncnorm2.R
R/REFSTD_2.R
R/truncgamma2.R
vignettes
vignettes/Section_2.PNG
vignettes/Section_3_2.PNG
vignettes/Section_1.PNG
vignettes/Density_refstd.PNG
vignettes/Section_4.PNG
vignettes/Ref.bib
vignettes/Section_3.PNG
vignettes/Tutorial.Rtex
vignettes/SROC_1.png
vignettes/Trace_plot_1_chain_2.PNG
vignettes/Trace_plot_refstd.PNG
vignettes/Density_2.PNG
vignettes/Trace_plot.PNG
vignettes/Section_2_2.PNG
MD5
build
build/vignette.rds
DESCRIPTION
man
man/In.house.Rd
man/HSROCSummary.Rd
man/beta.parameter.Rd
man/simdata.Rd
man/HSROC.Rd
man/MRI.Rd
.Rinstignore
HSROC documentation built on May 19, 2017, 3:39 p.m.