HW.pval: Testing Hardy-Weinberg Equilibrium for Multiallelic Genes

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HW.pval calculates plain and fully conditional root-mean-square, chi-square, and log likelihood-ratio P-values for the user-provided genotypic counts to be consistent with the Hardy-Weinberg equilibrium model. For further information on the Hardy-Weinberg equilibrium model and the pseudocode, refer to the paper "Testing Hardy-Weinberg equilibrium with a simple root-mean-square statistic" by Rachel Ward.

Author
Shubhodeep Mukherji <deep.mukherji@utexas.edu>
Date of publication
2012-07-11 12:43:08
Maintainer
Shubhodeep Mukherji <deep.mukherji@utexas.edu>
License
GPL-3
Version
1.0

View on CRAN

Man pages

create.model
Creating the Hardy-Weinberg model distribution from a given...
HW.cond
Computing the fully conditional P-value for a given...
HW.plain
Computing the plain P-Value for a given lower-triangular...
HW.pval
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
HW.pval-package
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
test.chisq
Computing the chi-square test statistic
test.gsq
Computing the log likelihood-ratio test statistic
test.rms
Computing the root-mean-square test statistic

Files in this package

HW.pval
HW.pval/MD5
HW.pval/R
HW.pval/R/HW.cond.R
HW.pval/R/create.model.R
HW.pval/R/test.chisq.R
HW.pval/R/HW.pval.R
HW.pval/R/test.gsq.R
HW.pval/R/test.rms.R
HW.pval/R/HW.plain.R
HW.pval/DESCRIPTION
HW.pval/man
HW.pval/man/test.chisq.Rd
HW.pval/man/HW.plain.Rd
HW.pval/man/HW.cond.Rd
HW.pval/man/HW.pval.Rd
HW.pval/man/test.rms.Rd
HW.pval/man/create.model.Rd
HW.pval/man/test.gsq.Rd
HW.pval/man/HW.pval-package.Rd
HW.pval/NAMESPACE