gene_comp: Model Gene Compendium Data Set
In HaploCatcher: A Predictive Haplotyping Package
gene_comp R Documentation
Model Gene Compendium Data Set
Description
A data frame which contains information from 1345 unique wheat lines on the Sst1 solid stem locus.
Usage
gene_comp
Format
A data frame with 1345 rows and 7 columns:
- Trait
A short discription of the phenotype associated with the gene
- Chromosome
The chromosome where the gene resides
- Gene
The name of the gene
- Nursery
The program which produced the gene call for the genotype
- Line
A breeder assigned line designation
- FullSampleName
A designation unique to the line found in the genotypic matrix
- Call
A 'call' given for the allelic state. For this package, it is best to format the non desiarable allele as "non_gene" and the heterozygous state as "het_gene".
Source
Generated by Zachary James Winn for the CSU breeding program via USDA-ARS gene reports and in-house gene assays
Examples
data("gene_comp") #lazy loads the dataset for use in the package
HaploCatcher documentation built on April 22, 2023, 1:17 a.m.
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| gene_comp | R Documentation |
Model Gene Compendium Data Set
Description
A data frame which contains information from 1345 unique wheat lines on the Sst1 solid stem locus.
Usage
gene_comp
Format
A data frame with 1345 rows and 7 columns:
- Trait
A short discription of the phenotype associated with the gene
- Chromosome
The chromosome where the gene resides
- Gene
The name of the gene
- Nursery
The program which produced the gene call for the genotype
- Line
A breeder assigned line designation
- FullSampleName
A designation unique to the line found in the genotypic matrix
- Call
A 'call' given for the allelic state. For this package, it is best to format the non desiarable allele as "non_gene" and the heterozygous state as "het_gene".
Source
Generated by Zachary James Winn for the CSU breeding program via USDA-ARS gene reports and in-house gene assays
Examples
data("gene_comp") #lazy loads the dataset for use in the package
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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