rna.nasc: Menet et al. RNA-Seq Data

In HarmonicRegression: Harmonic Regression to One or more Time Series

Description

Quantification of circadian transcriptional activity in mouse liver.

Format

a data frame with nascent RNA-seq data

Details

The nascent-seq data are thought to reflect transcriptional activities. Raw data was collected from the supplementary material of the original publication cited below. In that study, samples were collected at 6 different times of day in two biological replicates (fields ZT* in the data frame). The field 'mgi_symbol' refers to MGI gene names.

Source

Jerome S Menet, Joseph Rodriguez, Katharine C Abruzzi, Michael Rosbash. Nascent-Seq reveals novel features of mouse circadian transcriptional regulation. eLife 1:e00011 (2012).

Examples

data(rna.nasc)
nasc.t <- seq(0, 44, 4)
plot(nasc.t, rna.nasc["Arntl", -1], type="b")

Example output

HarmonicRegression documentation built on May 1, 2019, 6:50 p.m.