prune: Prune trajectories
In HetSeq: Identifying Modulators of Cellular Responses Leveraging Intercellular Heterogeneity
prune R Documentation
Prune trajectories
Description
Prune trajectories down to top.n candidates to reduce runtime of subsequent mincostflow function.
Usage
prune(D.list, top.n = 10)
Arguments
D.list
List of distance matrices. Can be generated by the distmat function.
top.n
Prune trajectories to only top.n possible connections to optimize subsequent application of the mincostflow function.
Value
Pruned distance matrix between cells from multiple timepoints.
Examples
# Full vignette available on https://grandr.erhard-lab.de/articles/web/hetseq.html
prune(D.list, top.n = 10)
HetSeq documentation built on April 4, 2025, 2:03 a.m.
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| prune | R Documentation |
Prune trajectories
Description
Prune trajectories down to top.n candidates to reduce runtime of subsequent mincostflow function.
Usage
prune(D.list, top.n = 10)
Arguments
D.list |
List of distance matrices. Can be generated by the distmat function. |
top.n |
Prune trajectories to only top.n possible connections to optimize subsequent application of the mincostflow function. |
Value
Pruned distance matrix between cells from multiple timepoints.
Examples
# Full vignette available on https://grandr.erhard-lab.de/articles/web/hetseq.html
prune(D.list, top.n = 10)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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