HiCseg: Detection of domains in HiC data

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This package allows you to detect domains in HiC data by rephrasing this problem as a two-dimensional segmentation issue.

Author
Celine Levy-Leduc
Date of publication
2014-06-10 16:34:53
Maintainer
Celine Levy-Leduc <celine.levy-leduc@agroparistech.fr>
License
GPL-2
Version
1.1

View on CRAN

Man pages

HiCseg_linkC_R
Link between C and R
HiCseg-package
Analysis of HiC data
matrix
Matrix of data

Files in this package

HiCseg
HiCseg/inst
HiCseg/inst/doc
HiCseg/inst/doc/HiCseg.Rnw
HiCseg/inst/doc/HiCseg.pdf
HiCseg/src
HiCseg/src/Makevars
HiCseg/src/HiCseg_linkR.c
HiCseg/NAMESPACE
HiCseg/data
HiCseg/data/matrix.rda
HiCseg/R
HiCseg/R/HiCseg_linkC_R.R
HiCseg/vignettes
HiCseg/vignettes/vignette_refs.bib
HiCseg/vignettes/HiCseg.Rnw
HiCseg/MD5
HiCseg/DESCRIPTION
HiCseg/man
HiCseg/man/HiCseg_linkC_R.Rd
HiCseg/man/matrix.Rd
HiCseg/man/HiCseg-package.Rd