HiCseg: Detection of domains in HiC data

This package allows you to detect domains in HiC data by rephrasing this problem as a two-dimensional segmentation issue.

Install the latest version of this package by entering the following in R:
install.packages("HiCseg")
AuthorCeline Levy-Leduc
Date of publication2014-06-10 16:34:53
MaintainerCeline Levy-Leduc <celine.levy-leduc@agroparistech.fr>
LicenseGPL-2
Version1.1

View on CRAN

Files

inst
inst/doc
inst/doc/HiCseg.Rnw
inst/doc/HiCseg.pdf
src
src/Makevars
src/HiCseg_linkR.c
NAMESPACE
data
data/matrix.rda
R
R/HiCseg_linkC_R.R
vignettes
vignettes/vignette_refs.bib
vignettes/HiCseg.Rnw
MD5
DESCRIPTION
man
man/HiCseg_linkC_R.Rd man/matrix.Rd man/HiCseg-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.