helper_collapseTableByLevenSim: helper_collapseTableByLevenSim

In HodgesTools: Common Use Tools for Genomic Analysis

helper_collapseTableByLevenSim

Description

Reads in a table and value for Levenshtein threshold and returns a table collapsed by threshold (highest p-value for each group)

Usage

helper_collapseTableByLevenSim(inputTable, levenSimThresholdVal)

Arguments

inputTable	dataframe. HOMER output table modified in the parent script–ready for filtering by Levenshtein similarity.
levenSimThresholdVal	float. Value for thresholding TFs. For groups of TFs with similar consensus sequences, the TF with the lowest p-value by HOMER will be retained.

Value

tibble

Author(s)

Tim Scott

HodgesTools documentation built on Dec. 8, 2022, 5:14 p.m.