IBDsim: Simulation of Chromosomal Regions Shared by Family Members

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R package for simulation of IBD sharing among family members. Using sex specific recombination rates from the Decode map (2010) of the human genome, phased chromosomes are simulated for all pedigree members, either by unconditional 'gene dropping' or conditional on a specified IBD pattern. Regions compatible with the query IBD pattern (possibly different from the conditional pattern) are subsequently detected and summarized.

Author
Magnus Dehli Vigeland
Date of publication
2016-04-28 11:50:02
Maintainer
Magnus Dehli Vigeland <magnusdv@studmed.uio.no>
License
GPL (>= 2)
Version
0.9-6

View on CRAN

Man pages

DecodeMap
Decode recombination map
dominant1
Autosomal dominant pedigree
IBDsim
IBD simulation
twoLocusIBD
Joint IBD probabilities for two linked loci

Files in this package

IBDsim
IBDsim/src
IBDsim/src/IBDsim.c
IBDsim/NAMESPACE
IBDsim/NEWS
IBDsim/data
IBDsim/data/dominant1.rda
IBDsim/data/DecodeMap.rda
IBDsim/data/datalist
IBDsim/R
IBDsim/R/summary.ibd.R
IBDsim/R/IBDsim.R
IBDsim/R/twoLocusIBD.R
IBDsim/R/ped_utils.R
IBDsim/R/meiosis.R
IBDsim/R/genedrop.R
IBDsim/R/ibd.runs.R
IBDsim/R/range_utils.R
IBDsim/R/map_utils.R
IBDsim/MD5
IBDsim/DESCRIPTION
IBDsim/man
IBDsim/man/IBDsim.Rd
IBDsim/man/twoLocusIBD.Rd
IBDsim/man/dominant1.Rd
IBDsim/man/DecodeMap.Rd