IDSL.CSA: Composite Spectra Analysis (CSA) for High-Resolution Mass Spectrometry Analyses

A fragmentation spectra detection pipeline for high-throughput LC/HRMS data processing using peaklists generated by the 'IDSL.IPA' workflow <doi:10.1021/acs.jproteome.2c00120>. The 'IDSL.CSA' package can deconvolute fragmentation spectra from Composite Spectra Analysis (CSA), Data Dependent Acquisition (DDA) analysis, and various Data-Independent Acquisition (DIA) methods such as MS^E, All-Ion Fragmentation (AIF) and SWATH-MS analysis. The 'IDSL.CSA' package was introduced in <doi:10.1021/acs.analchem.3c00376>.

Getting started

Package details

AuthorSadjad Fakouri-Baygi [aut] (<https://orcid.org/0000-0002-6864-6911>), Dinesh Barupal [cre, aut] (<https://orcid.org/0000-0002-9954-8628>)
MaintainerDinesh Barupal <dinesh.barupal@mssm.edu>
LicenseMIT + file LICENSE
Version1.2
URL https://github.com/idslme/idsl.csa
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("IDSL.CSA")

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IDSL.CSA documentation built on July 9, 2023, 6:09 p.m.