IDSL.CSA_MSPgenerator: IDSL.CSA MSP Generator

In IDSL.CSA: Composite Spectra Analysis (CSA) for High-Resolution Mass Spectrometry Analyses

IDSL.CSA MSP Generator

Description

This function creates standard .msp files that can also be used for Pepsearch.

Usage

IDSL.CSA_MSPgenerator(CSA_peaklist, msLevel, spectral_search_mode = "dda", 
spectral_search_mode_option = NA, number_processing_threads = 1)

Arguments

CSA_peaklist	A dataframe peaklist of co-detected peaks
spectral_search_mode	Type of analysis. spectral_search_mode = c("dda", "dia", "csa")
msLevel	MS level = c(1, 2)
spectral_search_mode_option	Secondary type of analysis. spectral_search_mode_option = c(NA, "rawddaspectra", "alignedtable")
number_processing_threads	Number of processing threads for multi-threaded processing

Value

A string of standard .msp file

IDSL.CSA documentation built on July 9, 2023, 6:09 p.m.